Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A5P29400 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A5P29400 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A5P29400 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A5P29400 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 AL109954.1-202ENST00000564051 2148 ntBASIC17.14■□□□□ 0.33
COL4A5P29400 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A5P29400 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL4A5P29400 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.14■□□□□ 0.33
COL4A5P29400 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A5P29400 AL354702.1-201ENST00000442006 1960 ntBASIC17.14■□□□□ 0.33
COL4A5P29400 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A5P29400 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
COL4A5P29400 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A5P29400 EMC4-208ENST00000559078 599 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A5P29400 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A5P29400 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A5P29400 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.13■□□□□ 0.33
COL4A5P29400 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
COL4A5P29400 AC215219.1-201ENST00000400706 1817 ntBASIC17.13■□□□□ 0.33
COL4A5P29400 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
COL4A5P29400 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 CTSL-202ENST00000342020 933 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL4A5P29400 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A5P29400 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC17.13■□□□□ 0.33
COL4A5P29400 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL4A5P29400 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 AL359219.1-201ENST00000556311 934 ntBASIC17.13■□□□□ 0.33
COL4A5P29400 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC17.13■□□□□ 0.33
COL4A5P29400 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL4A5P29400 AC010531.8-201ENST00000623341 685 ntBASIC17.13■□□□□ 0.33
COL4A5P29400 AC139713.2-207ENST00000641556 1292 ntBASIC17.13■□□□□ 0.33
COL4A5P29400 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.13■□□□□ 0.33
COL4A5P29400 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL4A5P29400 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC17.12■□□□□ 0.33
COL4A5P29400 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A5P29400 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 AL157823.1-201ENST00000403727 628 ntBASIC17.12■□□□□ 0.33
COL4A5P29400 FAM21EP-201ENST00000417804 985 ntBASIC17.12■□□□□ 0.33
COL4A5P29400 CDCA4P4-201ENST00000435216 680 ntBASIC17.12■□□□□ 0.33
COL4A5P29400 ZNF877P-201ENST00000437614 612 ntBASIC17.12■□□□□ 0.33
COL4A5P29400 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A5P29400 AC113347.2-201ENST00000512350 279 ntBASIC17.12■□□□□ 0.33
COL4A5P29400 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A5P29400 BATF-202ENST00000555504 361 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A5P29400 CES1P2-201ENST00000566467 1242 ntBASIC17.12■□□□□ 0.33
COL4A5P29400 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL4A5P29400 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC17.12■□□□□ 0.33
COL4A5P29400 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
COL4A5P29400 AC007950.2-201ENST00000615045 2347 ntBASIC17.12■□□□□ 0.33
COL4A5P29400 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 MYADML-201ENST00000474610 2147 ntBASIC17.12■□□□□ 0.33
COL4A5P29400 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL4A5P29400 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC17.12■□□□□ 0.33
COL4A5P29400 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.12■□□□□ 0.33
COL4A5P29400 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL4A5P29400 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms