Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HMGB1P09429 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGB1P09429 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGB1P09429 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGB1P09429 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 KRT8P4-201ENST00000509735 1454 ntBASIC17.4■□□□□ 0.38
HMGB1P09429 AC020910.6-201ENST00000623084 1459 ntBASIC17.4■□□□□ 0.38
HMGB1P09429 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HMGB1P09429 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.4■□□□□ 0.38
HMGB1P09429 AC112492.5-201ENST00000421897 457 ntBASIC17.4■□□□□ 0.38
HMGB1P09429 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGB1P09429 CNN2P10-201ENST00000443067 918 ntBASIC17.4■□□□□ 0.38
HMGB1P09429 KLF2P4-201ENST00000451959 1225 ntBASIC17.4■□□□□ 0.38
HMGB1P09429 CROCCP4-201ENST00000457096 498 ntBASIC17.4■□□□□ 0.38
HMGB1P09429 KRT17P8-201ENST00000540749 863 ntBASIC17.4■□□□□ 0.38
HMGB1P09429 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGB1P09429 PPY2P-201ENST00000582808 702 ntBASIC17.4■□□□□ 0.38
HMGB1P09429 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.4■□□□□ 0.38
HMGB1P09429 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HMGB1P09429 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGB1P09429 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGB1P09429 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB1P09429 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
HMGB1P09429 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
HMGB1P09429 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HMGB1P09429 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
HMGB1P09429 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
HMGB1P09429 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
HMGB1P09429 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGB1P09429 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
HMGB1P09429 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HMGB1P09429 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGB1P09429 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
HMGB1P09429 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGB1P09429 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HMGB1P09429 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGB1P09429 AC234783.1-201ENST00000441761 496 ntBASIC17.39■□□□□ 0.37
HMGB1P09429 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.39■□□□□ 0.37
HMGB1P09429 CICP12-201ENST00000455801 843 ntBASIC17.39■□□□□ 0.37
HMGB1P09429 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC17.39■□□□□ 0.37
HMGB1P09429 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC17.39■□□□□ 0.37
HMGB1P09429 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 AC027237.1-201ENST00000560942 655 ntBASIC17.39■□□□□ 0.37
HMGB1P09429 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.39■□□□□ 0.37
HMGB1P09429 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.39■□□□□ 0.37
HMGB1P09429 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.39■□□□□ 0.37
HMGB1P09429 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 AC008687.7-202ENST00000637404 953 ntBASIC17.39■□□□□ 0.37
HMGB1P09429 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
HMGB1P09429 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGB1P09429 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGB1P09429 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGB1P09429 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
HMGB1P09429 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGB1P09429 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.39■□□□□ 0.37
HMGB1P09429 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB1P09429 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.38■□□□□ 0.37
HMGB1P09429 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 HPD-204ENST00000543163 1709 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGB1P09429 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
HMGB1P09429 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB1P09429 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms