Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC24.44■■□□□ 1.5
CUX2O14529 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 BRD7P5-201ENST00000299197 1822 ntBASIC24.44■■□□□ 1.5
CUX2O14529 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 LILRP2-202ENST00000413572 1383 ntBASIC24.44■■□□□ 1.5
CUX2O14529 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC24.44■■□□□ 1.5
CUX2O14529 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 LINC00265-2P-201ENST00000413372 782 ntBASIC24.44■■□□□ 1.5
CUX2O14529 RPL18AP16-201ENST00000424057 531 ntBASIC24.44■■□□□ 1.5
CUX2O14529 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC24.44■■□□□ 1.5
CUX2O14529 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC24.44■■□□□ 1.5
CUX2O14529 KRT8P34-201ENST00000577607 1044 ntBASIC24.44■■□□□ 1.5
CUX2O14529 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC24.44■■□□□ 1.5
CUX2O14529 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
CUX2O14529 MIR6819-201ENST00000622122 61 ntBASIC24.44■■□□□ 1.5
CUX2O14529 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
CUX2O14529 ODCP-201ENST00000459650 1639 ntBASIC24.44■■□□□ 1.5
CUX2O14529 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC24.44■■□□□ 1.5
CUX2O14529 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC24.43■■□□□ 1.5
CUX2O14529 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC24.43■■□□□ 1.5
CUX2O14529 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC24.43■■□□□ 1.5
CUX2O14529 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUX2O14529 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC24.43■■□□□ 1.5
CUX2O14529 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC24.43■■□□□ 1.5
CUX2O14529 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUX2O14529 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC24.43■■□□□ 1.5
CUX2O14529 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUX2O14529 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUX2O14529 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
CUX2O14529 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUX2O14529 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC24.43■■□□□ 1.5
CUX2O14529 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC24.43■■□□□ 1.5
CUX2O14529 MIR181D-201ENST00000384853 137 ntBASIC24.43■■□□□ 1.5
CUX2O14529 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
CUX2O14529 AC069421.1-201ENST00000447462 323 ntBASIC24.43■■□□□ 1.5
CUX2O14529 GOLGA2P8-201ENST00000505201 779 ntBASIC24.43■■□□□ 1.5
CUX2O14529 EEF1GP8-201ENST00000506566 1154 ntBASIC24.43■■□□□ 1.5
CUX2O14529 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC24.43■■□□□ 1.5
CUX2O14529 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC24.43■■□□□ 1.5
CUX2O14529 AL139317.2-201ENST00000556998 158 ntBASIC24.43■■□□□ 1.5
CUX2O14529 CDC37P2-201ENST00000562287 1029 ntBASIC24.43■■□□□ 1.5
CUX2O14529 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC24.43■■□□□ 1.5
CUX2O14529 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUX2O14529 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC24.43■■□□□ 1.5
CUX2O14529 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CUX2O14529 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
CUX2O14529 AC112693.3-201ENST00000624819 1983 ntBASIC24.43■■□□□ 1.5
CUX2O14529 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
CUX2O14529 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 MROH4P-201ENST00000431302 1578 ntBASIC24.42■■□□□ 1.5
CUX2O14529 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC24.42■■□□□ 1.5
CUX2O14529 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC24.42■■□□□ 1.5
CUX2O14529 AC099343.1-201ENST00000513481 609 ntBASIC24.42■■□□□ 1.5
CUX2O14529 METTL7AP1-201ENST00000547343 496 ntBASIC24.42■■□□□ 1.5
CUX2O14529 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC24.42■■□□□ 1.5
CUX2O14529 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 DRG2-220ENST00000583355 891 ntTSL 3 BASIC24.42■■□□□ 1.5
CUX2O14529 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC24.42■■□□□ 1.5
CUX2O14529 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC24.42■■□□□ 1.5
CUX2O14529 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
CUX2O14529 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC24.42■■□□□ 1.5
CUX2O14529 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CUX2O14529 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 AL391005.1-201ENST00000623953 2435 ntBASIC24.41■■□□□ 1.5
CUX2O14529 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC24.41■■□□□ 1.5
CUX2O14529 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC24.41■■□□□ 1.5
CUX2O14529 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CUX2O14529 AC000077.1-201ENST00000420012 953 ntBASIC24.41■■□□□ 1.5
CUX2O14529 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC24.41■■□□□ 1.5
CUX2O14529 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC24.41■■□□□ 1.5
CUX2O14529 AC009041.4-201ENST00000620075 638 ntBASIC24.41■■□□□ 1.5
CUX2O14529 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CUX2O14529 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms