Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 MIR4722-201ENST00000578292 60 ntBASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 MIR6769A-201ENST00000617340 73 ntBASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
PAAF1Q9BRP4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 FGD5P1-202ENST00000614866 2498 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 TSPY25P-201ENST00000429463 745 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 RPL8P2-201ENST00000430538 502 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 AC069218.1-201ENST00000435269 762 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 MAGEA5-201ENST00000446757 942 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 FTLP1-201ENST00000449155 526 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 FGFR3P1-201ENST00000449999 601 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 RN7SL67P-201ENST00000492147 296 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 AC006480.2-201ENST00000609770 1337 ntBASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
PAAF1Q9BRP4 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 AC026320.2-201ENST00000434379 478 ntBASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PAAF1Q9BRP4 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms