Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 MIR1909-201ENST00000411312 80 ntBASIC11.44□□□□□ -0.58
CCDC140Q96MF4 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AL355994.2-201ENST00000447882 704 ntBASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 GPR53P-205ENST00000457298 1084 ntBASIC11.44□□□□□ -0.58
CCDC140Q96MF4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AC079316.1-201ENST00000548397 411 ntBASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AC117489.1-201ENST00000625169 3217 ntBASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AC215219.1-201ENST00000400706 1817 ntBASIC11.44□□□□□ -0.58
CCDC140Q96MF4 AC027601.5-201ENST00000624065 2482 ntBASIC11.44□□□□□ -0.58
CCDC140Q96MF4 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CCDC140Q96MF4 LINC01230-201ENST00000625222 3017 ntBASIC11.44□□□□□ -0.58
CCDC140Q96MF4 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 HSPA7-201ENST00000445535 1927 ntBASIC11.43□□□□□ -0.58
CCDC140Q96MF4 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC104989.1-201ENST00000519711 778 ntBASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 HILS1-202ENST00000545329 423 ntBASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AP006547.1-201ENST00000563435 692 ntBASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC239800.4-201ENST00000603712 296 ntBASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC008687.7-202ENST00000637404 953 ntBASIC11.43□□□□□ -0.58
CCDC140Q96MF4 MVK-217ENST00000639206 367 ntTSL 5 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 AC152010.1-201ENST00000415779 2006 ntBASIC11.43□□□□□ -0.58
CCDC140Q96MF4 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
CCDC140Q96MF4 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.43□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms