Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VMP1Q96GC9 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 BOLA2P3-201ENST00000404566 256 ntBASIC14.27□□□□□ -0.13
VMP1Q96GC9 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.27□□□□□ -0.13
VMP1Q96GC9 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 AC114812.1-204ENST00000449669 728 ntBASIC14.27□□□□□ -0.13
VMP1Q96GC9 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 AP001889.1-201ENST00000525414 633 ntBASIC14.27□□□□□ -0.13
VMP1Q96GC9 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 AC027612.1-201ENST00000445234 2395 ntBASIC14.27□□□□□ -0.13
VMP1Q96GC9 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 AC073869.1-201ENST00000415574 2762 ntBASIC14.27□□□□□ -0.13
VMP1Q96GC9 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VMP1Q96GC9 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.27□□□□□ -0.13
VMP1Q96GC9 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 AC104457.1-201ENST00000401024 814 ntBASIC14.26□□□□□ -0.13
VMP1Q96GC9 AC112492.5-201ENST00000421897 457 ntBASIC14.26□□□□□ -0.13
VMP1Q96GC9 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.26□□□□□ -0.13
VMP1Q96GC9 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
VMP1Q96GC9 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VMP1Q96GC9 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
VMP1Q96GC9 KRT8P35-201ENST00000483942 1338 ntBASIC14.25□□□□□ -0.13
VMP1Q96GC9 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms