Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 MIR3687-1-201ENST00000614492 61 ntBASIC16.66■□□□□ 0.26
TPM4P67936 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TPM4P67936 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
TPM4P67936 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 GALC-206ENST00000544807 2528 ntTSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TPM4P67936 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 MIR574-201ENST00000385209 96 ntBASIC16.65■□□□□ 0.26
TPM4P67936 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM4P67936 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM4P67936 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.65■□□□□ 0.26
TPM4P67936 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 AC069262.1-201ENST00000539058 672 ntBASIC16.65■□□□□ 0.26
TPM4P67936 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
TPM4P67936 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC16.65■□□□□ 0.26
TPM4P67936 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.65■□□□□ 0.26
TPM4P67936 AL138828.2-201ENST00000615812 383 ntBASIC16.65■□□□□ 0.26
TPM4P67936 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.65■□□□□ 0.26
TPM4P67936 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.65■□□□□ 0.26
TPM4P67936 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
TPM4P67936 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC16.65■□□□□ 0.26
TPM4P67936 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TPM4P67936 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TPM4P67936 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
TPM4P67936 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
TPM4P67936 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC16.64■□□□□ 0.26
TPM4P67936 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
TPM4P67936 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
TPM4P67936 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
TPM4P67936 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 KRT8P14-201ENST00000414254 1442 ntBASIC16.64■□□□□ 0.25
TPM4P67936 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TPM4P67936 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.64■□□□□ 0.25
TPM4P67936 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.64■□□□□ 0.25
TPM4P67936 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.64■□□□□ 0.25
TPM4P67936 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TPM4P67936 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
TPM4P67936 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.64■□□□□ 0.25
TPM4P67936 AL596442.2-201ENST00000610240 980 ntBASIC16.64■□□□□ 0.25
TPM4P67936 AC073592.8-201ENST00000624126 511 ntBASIC16.64■□□□□ 0.25
TPM4P67936 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TPM4P67936 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC16.64■□□□□ 0.25
TPM4P67936 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TPM4P67936 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 AC011840.2-201ENST00000563063 1520 ntBASIC16.64■□□□□ 0.25
TPM4P67936 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
TPM4P67936 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TPM4P67936 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms