Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CUX2O14529 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX2O14529 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX2O14529 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC24.48■■□□□ 1.51
CUX2O14529 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX2O14529 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX2O14529 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX2O14529 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX2O14529 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CUX2O14529 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC24.48■■□□□ 1.51
CUX2O14529 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
CUX2O14529 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX2O14529 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
CUX2O14529 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC24.47■■□□□ 1.51
CUX2O14529 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC24.47■■□□□ 1.51
CUX2O14529 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX2O14529 ST13P19-201ENST00000442505 1124 ntBASIC24.47■■□□□ 1.51
CUX2O14529 KRT18P62-201ENST00000446618 1287 ntBASIC24.47■■□□□ 1.51
CUX2O14529 GRPEL2P1-201ENST00000453145 339 ntBASIC24.47■■□□□ 1.51
CUX2O14529 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC24.47■■□□□ 1.51
CUX2O14529 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC24.47■■□□□ 1.51
CUX2O14529 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC24.47■■□□□ 1.51
CUX2O14529 NDUFB10P1-201ENST00000567319 521 ntBASIC24.47■■□□□ 1.51
CUX2O14529 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC24.47■■□□□ 1.51
CUX2O14529 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC24.47■■□□□ 1.51
CUX2O14529 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC24.47■■□□□ 1.51
CUX2O14529 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CUX2O14529 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX2O14529 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC24.47■■□□□ 1.51
CUX2O14529 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX2O14529 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CUX2O14529 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CUX2O14529 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
CUX2O14529 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC24.46■■□□□ 1.51
CUX2O14529 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC24.46■■□□□ 1.51
CUX2O14529 OR4C14P-201ENST00000440929 923 ntBASIC24.46■■□□□ 1.51
CUX2O14529 RN7SL838P-201ENST00000481676 295 ntBASIC24.46■■□□□ 1.51
CUX2O14529 AC112694.1-202ENST00000540985 943 ntBASIC24.46■■□□□ 1.51
CUX2O14529 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC24.46■■□□□ 1.51
CUX2O14529 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC24.46■■□□□ 1.51
CUX2O14529 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC24.46■■□□□ 1.51
CUX2O14529 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC24.46■■□□□ 1.51
CUX2O14529 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC24.46■■□□□ 1.51
CUX2O14529 AC026336.4-201ENST00000624565 1050 ntBASIC24.46■■□□□ 1.51
CUX2O14529 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 R3HDM2P2-201ENST00000401880 2116 ntBASIC24.46■■□□□ 1.51
CUX2O14529 AC026691.1-201ENST00000602502 2017 ntBASIC24.46■■□□□ 1.51
CUX2O14529 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 AC087481.3-201ENST00000602886 1894 ntBASIC24.46■■□□□ 1.51
CUX2O14529 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CUX2O14529 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC24.45■■□□□ 1.51
CUX2O14529 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC24.45■■□□□ 1.51
CUX2O14529 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC24.45■■□□□ 1.51
CUX2O14529 MIR193A-201ENST00000384882 88 ntBASIC24.45■■□□□ 1.51
CUX2O14529 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.51
CUX2O14529 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC24.45■■□□□ 1.51
CUX2O14529 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CUX2O14529 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CUX2O14529 RN7SL556P-201ENST00000582856 298 ntBASIC24.45■■□□□ 1.51
CUX2O14529 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CUX2O14529 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CUX2O14529 AL591122.2-201ENST00000624125 1853 ntBASIC24.45■■□□□ 1.5
CUX2O14529 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC24.45■■□□□ 1.5
CUX2O14529 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC24.45■■□□□ 1.5
CUX2O14529 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 AL121753.2-201ENST00000624581 1461 ntBASIC24.45■■□□□ 1.5
CUX2O14529 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC24.45■■□□□ 1.5
CUX2O14529 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC24.45■■□□□ 1.5
CUX2O14529 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CUX2O14529 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.5
CUX2O14529 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC24.45■■□□□ 1.5
CUX2O14529 MIR5193-201ENST00000584510 109 ntBASIC24.45■■□□□ 1.5
CUX2O14529 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC24.45■■□□□ 1.5
CUX2O14529 PRR20FP-201ENST00000603320 180 ntBASIC24.45■■□□□ 1.5
CUX2O14529 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
CUX2O14529 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CUX2O14529 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms