Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC16.9■□□□□ 0.3
SCN4AP35499 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC16.9■□□□□ 0.3
SCN4AP35499 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 AHCYP3-201ENST00000420053 1279 ntBASIC16.9■□□□□ 0.3
SCN4AP35499 AL356000.1-201ENST00000441073 1238 ntBASIC16.9■□□□□ 0.3
SCN4AP35499 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC16.9■□□□□ 0.3
SCN4AP35499 AC090820.1-201ENST00000519722 591 ntBASIC16.9■□□□□ 0.3
SCN4AP35499 AC004923.3-201ENST00000527532 355 ntBASIC16.9■□□□□ 0.3
SCN4AP35499 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SCN4AP35499 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 RN7SL524P-201ENST00000581152 300 ntBASIC16.9■□□□□ 0.3
SCN4AP35499 AC020922.4-201ENST00000621389 339 ntBASIC16.9■□□□□ 0.3
SCN4AP35499 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC16.9■□□□□ 0.3
SCN4AP35499 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.9■□□□□ 0.3
SCN4AP35499 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.9■□□□□ 0.3
SCN4AP35499 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.9■□□□□ 0.3
SCN4AP35499 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
SCN4AP35499 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.9■□□□□ 0.3
SCN4AP35499 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.9■□□□□ 0.3
SCN4AP35499 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.9■□□□□ 0.3
SCN4AP35499 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SCN4AP35499 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SCN4AP35499 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC16.89■□□□□ 0.3
SCN4AP35499 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
SCN4AP35499 AC025594.1-201ENST00000469533 543 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 SNRPD2P2-201ENST00000473818 333 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 AC092910.2-201ENST00000491262 348 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 AC026412.1-206ENST00000502273 206 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC16.89■□□□□ 0.29
SCN4AP35499 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC16.89■□□□□ 0.29
SCN4AP35499 AC016582.2-202ENST00000587765 1094 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC16.89■□□□□ 0.29
SCN4AP35499 AC113385.2-201ENST00000614465 762 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SCN4AP35499 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 AC147876.1-201ENST00000504408 322 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 TBC1D3P6-201ENST00000505954 962 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 AC011431.1-201ENST00000512971 230 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC16.89■□□□□ 0.29
SCN4AP35499 ACY3-202ENST00000529256 933 ntTSL 3 BASIC16.89■□□□□ 0.29
SCN4AP35499 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC16.89■□□□□ 0.29
SCN4AP35499 AC254633.1-201ENST00000606790 345 ntBASIC16.89■□□□□ 0.29
SCN4AP35499 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.88■□□□□ 0.29
SCN4AP35499 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.88■□□□□ 0.29
SCN4AP35499 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
SCN4AP35499 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
SCN4AP35499 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 SHMT1P1-201ENST00000419974 1312 ntBASIC16.88■□□□□ 0.29
SCN4AP35499 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.88■□□□□ 0.29
SCN4AP35499 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.88■□□□□ 0.29
SCN4AP35499 U73169.1-201ENST00000395152 367 ntBASIC16.88■□□□□ 0.29
SCN4AP35499 AL161932.2-201ENST00000435436 679 ntBASIC16.88■□□□□ 0.29
SCN4AP35499 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC16.88■□□□□ 0.29
SCN4AP35499 LY6E-215ENST00000523847 427 ntTSL 3 BASIC16.88■□□□□ 0.29
SCN4AP35499 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC16.88■□□□□ 0.29
SCN4AP35499 AL359219.1-201ENST00000556311 934 ntBASIC16.88■□□□□ 0.29
SCN4AP35499 AC005586.2-201ENST00000563946 837 ntBASIC16.88■□□□□ 0.29
SCN4AP35499 RN7SL440P-201ENST00000577855 343 ntBASIC16.88■□□□□ 0.29
SCN4AP35499 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC16.88■□□□□ 0.29
SCN4AP35499 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SCN4AP35499 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms