Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
LIM2P55344 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
LIM2P55344 AL136172.1-201ENST00000598590 1394 ntBASIC14.08□□□□□ -0.16
LIM2P55344 AC126755.1-201ENST00000525846 6405 ntBASIC14.08□□□□□ -0.16
LIM2P55344 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LIM2P55344 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
LIM2P55344 AL161772.1-201ENST00000610494 4412 ntBASIC14.08□□□□□ -0.16
LIM2P55344 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
LIM2P55344 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
LIM2P55344 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
LIM2P55344 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
LIM2P55344 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.07□□□□□ -0.16
LIM2P55344 GK-202ENST00000378941 458 ntTSL 3 BASIC14.07□□□□□ -0.16
LIM2P55344 MIR658-201ENST00000385210 100 ntBASIC14.07□□□□□ -0.16
LIM2P55344 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
LIM2P55344 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 AC099336.1-201ENST00000417053 1171 ntBASIC14.07□□□□□ -0.16
LIM2P55344 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.07□□□□□ -0.16
LIM2P55344 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 HLA-V-201ENST00000429037 534 ntBASIC14.07□□□□□ -0.16
LIM2P55344 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC14.07□□□□□ -0.16
LIM2P55344 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC14.07□□□□□ -0.16
LIM2P55344 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.07□□□□□ -0.16
LIM2P55344 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.07□□□□□ -0.16
LIM2P55344 C2orf69P2-201ENST00000562032 1123 ntBASIC14.07□□□□□ -0.16
LIM2P55344 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.07□□□□□ -0.16
LIM2P55344 MIR4259-201ENST00000584466 101 ntBASIC14.07□□□□□ -0.16
LIM2P55344 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 COX11-210ENST00000639671 696 ntBASIC14.07□□□□□ -0.16
LIM2P55344 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 MRPL37P1-201ENST00000592451 1337 ntBASIC14.07□□□□□ -0.16
LIM2P55344 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 AL354702.1-201ENST00000442006 1960 ntBASIC14.07□□□□□ -0.16
LIM2P55344 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
LIM2P55344 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
LIM2P55344 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LIM2P55344 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 AL928921.2-201ENST00000641325 2442 ntBASIC14.06□□□□□ -0.16
LIM2P55344 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.06□□□□□ -0.16
LIM2P55344 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 AC136759.1-202ENST00000530858 2194 ntBASIC14.06□□□□□ -0.16
LIM2P55344 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LIM2P55344 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
LIM2P55344 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
LIM2P55344 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.06□□□□□ -0.16
LIM2P55344 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LIM2P55344 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.06□□□□□ -0.16
LIM2P55344 ATP5G2P4-201ENST00000442175 420 ntBASIC14.06□□□□□ -0.16
LIM2P55344 CSF2RBP1-201ENST00000447905 391 ntBASIC14.06□□□□□ -0.16
LIM2P55344 KRT223P-202ENST00000449164 1292 ntBASIC14.06□□□□□ -0.16
LIM2P55344 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.06□□□□□ -0.16
LIM2P55344 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms