Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC104073.2-201ENST00000453737 312 ntBASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 AC024681.1-201ENST00000521917 487 ntBASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 AC100827.2-201ENST00000563214 1194 ntBASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 FGFR3P5-201ENST00000564496 886 ntBASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 PCDHA3-202ENST00000532566 4594 ntBASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TM9SF3Q9HD45 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AC005089.1-201ENST00000619486 2241 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 SNX18-202ENST00000343017 3140 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AL137783.1-201ENST00000623494 1896 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AC091046.1-201ENST00000331871 207 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 SUPT4H1P2-201ENST00000501248 353 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 MIR4783-201ENST00000580343 82 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 RN7SL574P-201ENST00000581512 297 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 CICP4-201ENST00000447359 2812 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 AC026748.1-201ENST00000624349 3251 ntBASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.85□□□□□ -0.03
TM9SF3Q9HD45 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
TM9SF3Q9HD45 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms