Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
TNFP01375 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.43□□□□□ -0.1
TNFP01375 AC006335.1-201ENST00000445200 547 ntBASIC14.43□□□□□ -0.1
TNFP01375 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC14.43□□□□□ -0.1
TNFP01375 RN7SL769P-201ENST00000469386 295 ntBASIC14.43□□□□□ -0.1
TNFP01375 RN7SL720P-201ENST00000488178 304 ntBASIC14.43□□□□□ -0.1
TNFP01375 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.43□□□□□ -0.1
TNFP01375 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.43□□□□□ -0.1
TNFP01375 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.43□□□□□ -0.1
TNFP01375 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
TNFP01375 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 AC097376.2-205ENST00000610159 5334 ntBASIC14.43□□□□□ -0.1
TNFP01375 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
TNFP01375 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.43□□□□□ -0.1
TNFP01375 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
TNFP01375 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.43□□□□□ -0.1
TNFP01375 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
TNFP01375 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.43□□□□□ -0.1
TNFP01375 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 AC023157.3-201ENST00000619086 2088 ntBASIC14.42□□□□□ -0.1
TNFP01375 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
TNFP01375 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
TNFP01375 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 AC006122.1-201ENST00000493323 440 ntBASIC14.42□□□□□ -0.1
TNFP01375 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.42□□□□□ -0.1
TNFP01375 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 AC133540.1-201ENST00000620845 1019 ntBASIC14.42□□□□□ -0.1
TNFP01375 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
TNFP01375 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.42□□□□□ -0.1
TNFP01375 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.42□□□□□ -0.1
TNFP01375 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
TNFP01375 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
TNFP01375 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.41□□□□□ -0.1
TNFP01375 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.41□□□□□ -0.1
TNFP01375 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
TNFP01375 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.41□□□□□ -0.1
TNFP01375 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.41□□□□□ -0.1
TNFP01375 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TNFP01375 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms