Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC17.27■□□□□ 0.36
CDKL5O76039 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CDKL5O76039 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.35
CDKL5O76039 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.27■□□□□ 0.35
CDKL5O76039 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
CDKL5O76039 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CDKL5O76039 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CDKL5O76039 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC17.27■□□□□ 0.35
CDKL5O76039 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDKL5O76039 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.26■□□□□ 0.35
CDKL5O76039 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CDKL5O76039 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.26■□□□□ 0.35
CDKL5O76039 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.26■□□□□ 0.35
CDKL5O76039 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CDKL5O76039 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
CDKL5O76039 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.26■□□□□ 0.35
CDKL5O76039 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.26■□□□□ 0.35
CDKL5O76039 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.26■□□□□ 0.35
CDKL5O76039 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.26■□□□□ 0.35
CDKL5O76039 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 CNN2P8-201ENST00000421872 913 ntBASIC17.26■□□□□ 0.35
CDKL5O76039 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.26■□□□□ 0.35
CDKL5O76039 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.26■□□□□ 0.35
CDKL5O76039 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.26■□□□□ 0.35
CDKL5O76039 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.26■□□□□ 0.35
CDKL5O76039 OR10B1P-201ENST00000601666 907 ntBASIC17.26■□□□□ 0.35
CDKL5O76039 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 AP001002.3-201ENST00000623482 206 ntBASIC17.26■□□□□ 0.35
CDKL5O76039 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.26■□□□□ 0.35
CDKL5O76039 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CDKL5O76039 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.26■□□□□ 0.35
CDKL5O76039 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.26■□□□□ 0.35
CDKL5O76039 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDKL5O76039 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CDKL5O76039 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC17.26■□□□□ 0.35
CDKL5O76039 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 AC139749.1-202ENST00000617529 3139 ntBASIC17.25■□□□□ 0.35
CDKL5O76039 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
CDKL5O76039 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.25■□□□□ 0.35
CDKL5O76039 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CDKL5O76039 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.25■□□□□ 0.35
CDKL5O76039 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.25■□□□□ 0.35
CDKL5O76039 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.25■□□□□ 0.35
CDKL5O76039 ARSEP1-201ENST00000420443 635 ntBASIC17.25■□□□□ 0.35
CDKL5O76039 PUDPP3-201ENST00000445368 636 ntBASIC17.25■□□□□ 0.35
CDKL5O76039 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.25■□□□□ 0.35
CDKL5O76039 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.25■□□□□ 0.35
CDKL5O76039 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 AC012645.4-201ENST00000610691 1061 ntBASIC17.25■□□□□ 0.35
CDKL5O76039 MIR6074-201ENST00000612054 107 ntBASIC17.25■□□□□ 0.35
CDKL5O76039 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC17.25■□□□□ 0.35
CDKL5O76039 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 AL354989.2-201ENST00000435838 1540 ntBASIC17.25■□□□□ 0.35
CDKL5O76039 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.25■□□□□ 0.35
CDKL5O76039 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDKL5O76039 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms