Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
NPHP4O75161 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 AC092850.2-201ENST00000623821 2697 ntBASIC20.22■□□□□ 0.83
NPHP4O75161 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP4O75161 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP4O75161 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NPHP4O75161 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 LINP1-201ENST00000417112 917 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP4O75161 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP4O75161 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC20.22■□□□□ 0.83
NPHP4O75161 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC20.22■□□□□ 0.83
NPHP4O75161 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP4O75161 BMF-206ENST00000558774 671 ntTSL 3 BASIC20.22■□□□□ 0.83
NPHP4O75161 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC20.22■□□□□ 0.83
NPHP4O75161 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC20.22■□□□□ 0.83
NPHP4O75161 MIR4746-201ENST00000579802 71 ntBASIC20.22■□□□□ 0.83
NPHP4O75161 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
NPHP4O75161 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP4O75161 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP4O75161 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP4O75161 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.22■□□□□ 0.83
NPHP4O75161 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
NPHP4O75161 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
NPHP4O75161 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
NPHP4O75161 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC20.22■□□□□ 0.83
NPHP4O75161 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPHP4O75161 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP4O75161 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
NPHP4O75161 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP4O75161 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC20.21■□□□□ 0.83
NPHP4O75161 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP4O75161 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP4O75161 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC20.21■□□□□ 0.83
NPHP4O75161 AC126755.5-201ENST00000622756 267 ntBASIC20.21■□□□□ 0.83
NPHP4O75161 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 AC023024.2-201ENST00000623561 1993 ntBASIC20.21■□□□□ 0.83
NPHP4O75161 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
NPHP4O75161 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP4O75161 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP4O75161 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
NPHP4O75161 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC20.21■□□□□ 0.83
NPHP4O75161 OLA1P2-201ENST00000395519 1264 ntBASIC20.2■□□□□ 0.82
NPHP4O75161 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC20.2■□□□□ 0.82
NPHP4O75161 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC20.2■□□□□ 0.82
NPHP4O75161 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC20.2■□□□□ 0.82
NPHP4O75161 AC108724.1-201ENST00000481669 352 ntBASIC20.2■□□□□ 0.82
NPHP4O75161 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC20.2■□□□□ 0.82
NPHP4O75161 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC20.2■□□□□ 0.82
NPHP4O75161 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
NPHP4O75161 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC20.2■□□□□ 0.82
NPHP4O75161 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
NPHP4O75161 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
NPHP4O75161 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
NPHP4O75161 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
NPHP4O75161 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.2■□□□□ 0.82
NPHP4O75161 AL137244.1-201ENST00000422931 865 ntBASIC20.19■□□□□ 0.82
NPHP4O75161 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NPHP4O75161 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms