Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
TTC28Q96AY4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
TTC28Q96AY4 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TTC28Q96AY4 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.63□□□□□ -0.07
TTC28Q96AY4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
TTC28Q96AY4 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
TTC28Q96AY4 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC14.63□□□□□ -0.07
TTC28Q96AY4 ALG10-202ENST00000538927 571 ntTSL 5 BASIC14.63□□□□□ -0.07
TTC28Q96AY4 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
TTC28Q96AY4 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
TTC28Q96AY4 RN7SL480P-201ENST00000581481 294 ntBASIC14.63□□□□□ -0.07
TTC28Q96AY4 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
TTC28Q96AY4 AC092364.2-201ENST00000596710 2692 ntBASIC14.62□□□□□ -0.07
TTC28Q96AY4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 METTL22-203ENST00000561758 1312 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.62□□□□□ -0.07
TTC28Q96AY4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 NR0B1-201ENST00000378963 475 ntTSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 AC103563.1-201ENST00000429316 123 ntBASIC14.62□□□□□ -0.07
TTC28Q96AY4 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 PSME3-213ENST00000592169 826 ntTSL 3 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 PDZRN3-AS1-203ENST00000608743 780 ntTSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 AC009041.4-201ENST00000620075 638 ntBASIC14.62□□□□□ -0.07
TTC28Q96AY4 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TTC28Q96AY4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.62□□□□□ -0.07
TTC28Q96AY4 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 IQCF4-203ENST00000428561 420 ntBASIC14.61□□□□□ -0.07
TTC28Q96AY4 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 CCND3P1-201ENST00000438347 580 ntBASIC14.61□□□□□ -0.07
TTC28Q96AY4 ALDOAP1-201ENST00000491506 1078 ntBASIC14.61□□□□□ -0.07
TTC28Q96AY4 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC14.61□□□□□ -0.07
TTC28Q96AY4 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TTC28Q96AY4 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC14.61□□□□□ -0.07
TTC28Q96AY4 PRSS3P1-201ENST00000503996 742 ntBASIC14.61□□□□□ -0.07
TTC28Q96AY4 AC091769.1-201ENST00000619576 568 ntBASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms