Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
CX3CR1P49238 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CX3CR1P49238 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 AC015802.1-201ENST00000588104 1449 ntBASIC13.13□□□□□ -0.31
CX3CR1P49238 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.13□□□□□ -0.31
CX3CR1P49238 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CX3CR1P49238 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 LINC01230-201ENST00000625222 3017 ntBASIC13.13□□□□□ -0.31
CX3CR1P49238 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CX3CR1P49238 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
CX3CR1P49238 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 AL354702.1-201ENST00000442006 1960 ntBASIC13.13□□□□□ -0.31
CX3CR1P49238 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.13□□□□□ -0.31
CX3CR1P49238 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.13□□□□□ -0.31
CX3CR1P49238 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 TSPY16P-201ENST00000449843 468 ntBASIC13.13□□□□□ -0.31
CX3CR1P49238 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC13.13□□□□□ -0.31
CX3CR1P49238 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.13□□□□□ -0.31
CX3CR1P49238 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.13□□□□□ -0.31
CX3CR1P49238 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 INO80C-206ENST00000586489 594 ntTSL 3 BASIC13.13□□□□□ -0.31
CX3CR1P49238 TMEM261P1-201ENST00000604899 340 ntBASIC13.13□□□□□ -0.31
CX3CR1P49238 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CX3CR1P49238 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.13□□□□□ -0.31
CX3CR1P49238 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 HSPA7-201ENST00000445535 1927 ntBASIC13.13□□□□□ -0.31
CX3CR1P49238 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CX3CR1P49238 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.13□□□□□ -0.31
CX3CR1P49238 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CX3CR1P49238 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.13□□□□□ -0.31
CX3CR1P49238 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CR1P49238 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CR1P49238 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CR1P49238 AC010327.5-201ENST00000586923 3061 ntBASIC13.12□□□□□ -0.31
CX3CR1P49238 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CR1P49238 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CR1P49238 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CX3CR1P49238 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CX3CR1P49238 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CR1P49238 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.12□□□□□ -0.31
CX3CR1P49238 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CR1P49238 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CR1P49238 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CR1P49238 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CR1P49238 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CR1P49238 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.12□□□□□ -0.31
CX3CR1P49238 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.12□□□□□ -0.31
CX3CR1P49238 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.12□□□□□ -0.31
CX3CR1P49238 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC13.12□□□□□ -0.31
CX3CR1P49238 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CX3CR1P49238 AC026434.2-201ENST00000506094 1078 ntBASIC13.12□□□□□ -0.31
CX3CR1P49238 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.12□□□□□ -0.31
CX3CR1P49238 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.12□□□□□ -0.31
CX3CR1P49238 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC13.12□□□□□ -0.31
CX3CR1P49238 AC027796.2-201ENST00000575326 344 ntBASIC13.12□□□□□ -0.31
CX3CR1P49238 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.12□□□□□ -0.31
CX3CR1P49238 CHCHD2P3-201ENST00000603038 451 ntBASIC13.12□□□□□ -0.31
CX3CR1P49238 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms