Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC104457.1-201ENST00000401024 814 ntBASIC14.07□□□□□ -0.16
SOX3P41225 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.07□□□□□ -0.16
SOX3P41225 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX3P41225 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX3P41225 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.07□□□□□ -0.16
SOX3P41225 RPL7P3-201ENST00000441388 714 ntBASIC14.07□□□□□ -0.16
SOX3P41225 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX3P41225 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
SOX3P41225 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX3P41225 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.07□□□□□ -0.16
SOX3P41225 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX3P41225 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX3P41225 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.07□□□□□ -0.16
SOX3P41225 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.07□□□□□ -0.16
SOX3P41225 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
SOX3P41225 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.07□□□□□ -0.16
SOX3P41225 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
SOX3P41225 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.07□□□□□ -0.16
SOX3P41225 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
SOX3P41225 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 AL928921.2-201ENST00000641325 2442 ntBASIC14.06□□□□□ -0.16
SOX3P41225 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
SOX3P41225 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.06□□□□□ -0.16
SOX3P41225 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 GHSR-202ENST00000427970 912 ntBASIC14.06□□□□□ -0.16
SOX3P41225 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.06□□□□□ -0.16
SOX3P41225 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.06□□□□□ -0.16
SOX3P41225 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.06□□□□□ -0.16
SOX3P41225 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.06□□□□□ -0.16
SOX3P41225 KRT90P-201ENST00000549264 1064 ntBASIC14.06□□□□□ -0.16
SOX3P41225 AC025279.2-201ENST00000569730 653 ntBASIC14.06□□□□□ -0.16
SOX3P41225 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 MIR6752-201ENST00000618442 71 ntBASIC14.06□□□□□ -0.16
SOX3P41225 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.06□□□□□ -0.16
SOX3P41225 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
SOX3P41225 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.06□□□□□ -0.16
SOX3P41225 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SOX3P41225 KRT8P14-201ENST00000414254 1442 ntBASIC14.06□□□□□ -0.16
SOX3P41225 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms