Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 AL512599.1-201ENST00000430724 685 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC17.26■□□□□ 0.35
COL4A5P29400 HNRNPA1P2-207ENST00000432375 960 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 GRPEL2P1-201ENST00000453145 339 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 PFN2-212ENST00000490975 858 ntTSL 4 BASIC17.26■□□□□ 0.35
COL4A5P29400 RN7SL767P-201ENST00000493013 295 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 EEF1GP8-201ENST00000506566 1154 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC17.26■□□□□ 0.35
COL4A5P29400 AC090136.2-201ENST00000517809 420 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 COQ4-204ENST00000608951 781 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.26■□□□□ 0.35
COL4A5P29400 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.26■□□□□ 0.35
COL4A5P29400 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC17.26■□□□□ 0.35
COL4A5P29400 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 PDXDC2P-206ENST00000534700 1315 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC17.26■□□□□ 0.35
COL4A5P29400 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL4A5P29400 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 LINC00265-2P-201ENST00000413372 782 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC17.26■□□□□ 0.35
COL4A5P29400 BRI3P1-201ENST00000440440 378 ntBASIC17.26■□□□□ 0.35
COL4A5P29400 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC17.26■□□□□ 0.35
COL4A5P29400 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 APOC1-209ENST00000592885 562 ntTSL 3 BASIC17.26■□□□□ 0.35
COL4A5P29400 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL4A5P29400 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL4A5P29400 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
COL4A5P29400 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.25■□□□□ 0.35
COL4A5P29400 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
COL4A5P29400 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 LINC00115-201ENST00000473798 1317 ntBASIC17.25■□□□□ 0.35
COL4A5P29400 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 PPT1-215ENST00000641471 2368 ntBASIC17.25■□□□□ 0.35
COL4A5P29400 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC17.25■□□□□ 0.35
COL4A5P29400 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC17.25■□□□□ 0.35
COL4A5P29400 AC004522.1-201ENST00000419978 654 ntBASIC17.25■□□□□ 0.35
COL4A5P29400 OR51A9P-201ENST00000422578 911 ntBASIC17.25■□□□□ 0.35
COL4A5P29400 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
COL4A5P29400 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.25■□□□□ 0.35
COL4A5P29400 RN7SL375P-201ENST00000492442 298 ntBASIC17.25■□□□□ 0.35
COL4A5P29400 SKA2-205ENST00000580541 689 ntTSL 3 BASIC17.25■□□□□ 0.35
COL4A5P29400 AP005264.5-201ENST00000590066 467 ntBASIC17.25■□□□□ 0.35
COL4A5P29400 AL160191.2-201ENST00000603975 601 ntBASIC17.25■□□□□ 0.35
COL4A5P29400 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
COL4A5P29400 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A5P29400 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC17.25■□□□□ 0.35
COL4A5P29400 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
COL4A5P29400 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
COL4A5P29400 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
COL4A5P29400 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
COL4A5P29400 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A5P29400 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.24■□□□□ 0.35
COL4A5P29400 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A5P29400 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A5P29400 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A5P29400 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 PIFO-201ENST00000369737 746 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A5P29400 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC17.24■□□□□ 0.35
COL4A5P29400 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A5P29400 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC17.24■□□□□ 0.35
COL4A5P29400 AC145285.5-201ENST00000562217 361 ntBASIC17.24■□□□□ 0.35
COL4A5P29400 NAV1-210ENST00000593583 726 ntBASIC17.24■□□□□ 0.35
COL4A5P29400 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC17.24■□□□□ 0.35
COL4A5P29400 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
COL4A5P29400 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
COL4A5P29400 KRT8P43-201ENST00000406052 1458 ntBASIC17.24■□□□□ 0.35
COL4A5P29400 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
COL4A5P29400 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms