Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX1O00570 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 TREX1-203ENST00000456089 629 ntTSL 3 BASIC15.51■□□□□ 0.07
SOX1O00570 AC025594.1-201ENST00000469533 543 ntBASIC15.51■□□□□ 0.07
SOX1O00570 DPY19L2P4-201ENST00000479881 442 ntBASIC15.51■□□□□ 0.07
SOX1O00570 AC092910.2-201ENST00000491262 348 ntBASIC15.51■□□□□ 0.07
SOX1O00570 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC15.51■□□□□ 0.07
SOX1O00570 VENTXP3-201ENST00000546480 773 ntBASIC15.51■□□□□ 0.07
SOX1O00570 HNRNPA1P5-201ENST00000558213 966 ntBASIC15.51■□□□□ 0.07
SOX1O00570 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 AC079331.1-201ENST00000623200 1200 ntBASIC15.51■□□□□ 0.07
SOX1O00570 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC15.51■□□□□ 0.07
SOX1O00570 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.51■□□□□ 0.07
SOX1O00570 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
SOX1O00570 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
SOX1O00570 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
SOX1O00570 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC15.51■□□□□ 0.07
SOX1O00570 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 TNRC18P3-201ENST00000441896 2691 ntBASIC15.51■□□□□ 0.07
SOX1O00570 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SOX1O00570 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SOX1O00570 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
SOX1O00570 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SOX1O00570 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX1O00570 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 KRT8P6-201ENST00000399259 1207 ntBASIC15.5■□□□□ 0.07
SOX1O00570 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC15.5■□□□□ 0.07
SOX1O00570 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.5■□□□□ 0.07
SOX1O00570 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX1O00570 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX1O00570 RN7SL578P-201ENST00000477781 283 ntBASIC15.5■□□□□ 0.07
SOX1O00570 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX1O00570 AC147876.1-201ENST00000504408 322 ntBASIC15.5■□□□□ 0.07
SOX1O00570 TMA16-204ENST00000508268 608 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX1O00570 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC15.5■□□□□ 0.07
SOX1O00570 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX1O00570 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX1O00570 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.5■□□□□ 0.07
SOX1O00570 BMF-206ENST00000558774 671 ntTSL 3 BASIC15.5■□□□□ 0.07
SOX1O00570 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC15.5■□□□□ 0.07
SOX1O00570 AC079414.2-201ENST00000567157 1104 ntBASIC15.5■□□□□ 0.07
SOX1O00570 PRMT1P1-201ENST00000604252 1009 ntBASIC15.5■□□□□ 0.07
SOX1O00570 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX1O00570 AC005746.3-201ENST00000614751 393 ntBASIC15.5■□□□□ 0.07
SOX1O00570 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.5■□□□□ 0.07
SOX1O00570 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 ZBED1P1-201ENST00000502364 1930 ntBASIC15.5■□□□□ 0.07
SOX1O00570 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
SOX1O00570 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 AC127383.1-201ENST00000444697 1800 ntBASIC15.5■□□□□ 0.07
SOX1O00570 AC112504.1-201ENST00000623415 1841 ntBASIC15.5■□□□□ 0.07
SOX1O00570 AC092171.3-201ENST00000610122 2651 ntBASIC15.5■□□□□ 0.07
SOX1O00570 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
SOX1O00570 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.5■□□□□ 0.07
SOX1O00570 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SOX1O00570 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX1O00570 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX1O00570 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SOX1O00570 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
SOX1O00570 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX1O00570 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX1O00570 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SOX1O00570 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX1O00570 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX1O00570 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX1O00570 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
SOX1O00570 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SOX1O00570 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC15.49■□□□□ 0.07
SOX1O00570 SAT1-201ENST00000379251 801 ntTSL 2 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms