Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AC118758.2-201ENST00000614242 2813 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AL133267.1-201ENST00000398220 340 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 FO393414.2-201ENST00000405153 598 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AC093909.1-201ENST00000504731 1122 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AC243562.1-201ENST00000560672 389 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AL645728.2-202ENST00000641679 227 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AL591122.2-201ENST00000624125 1853 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 IMPDH1P4-201ENST00000445028 1534 ntBASIC10.93□□□□□ -0.66
SMKR1H3BMG3 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC10.93□□□□□ -0.66
SMKR1H3BMG3 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 AMOTL2-202ENST00000422605 4335 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 AC114271.1-201ENST00000612689 2813 ntBASIC10.92□□□□□ -0.66
SMKR1H3BMG3 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
SMKR1H3BMG3 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms