Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AC079328.1-201ENST00000560358 952 ntBASIC16.2■□□□□ 0.18
VPS52Q8N1B4 AC106820.3-201ENST00000561653 397 ntBASIC16.2■□□□□ 0.18
VPS52Q8N1B4 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 AC138649.2-201ENST00000615886 705 ntBASIC16.2■□□□□ 0.18
VPS52Q8N1B4 AP001002.3-201ENST00000623482 206 ntBASIC16.2■□□□□ 0.18
VPS52Q8N1B4 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 AL603764.1-201ENST00000636452 321 ntBASIC16.2■□□□□ 0.18
VPS52Q8N1B4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 C18orf15-201ENST00000623680 2534 ntBASIC16.2■□□□□ 0.18
VPS52Q8N1B4 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 AC055811.4-201ENST00000624039 1754 ntBASIC16.2■□□□□ 0.18
VPS52Q8N1B4 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS52Q8N1B4 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 AC112693.3-201ENST00000624819 1983 ntBASIC16.19■□□□□ 0.18
VPS52Q8N1B4 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.19■□□□□ 0.18
VPS52Q8N1B4 AC016700.1-201ENST00000429424 312 ntBASIC16.19■□□□□ 0.18
VPS52Q8N1B4 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 AC105129.2-201ENST00000559536 390 ntBASIC16.19■□□□□ 0.18
VPS52Q8N1B4 AC005730.2-201ENST00000564549 1184 ntBASIC16.19■□□□□ 0.18
VPS52Q8N1B4 RN7SL190P-201ENST00000582519 257 ntBASIC16.19■□□□□ 0.18
VPS52Q8N1B4 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 AC138627.1-207ENST00000641560 1006 ntBASIC16.19■□□□□ 0.18
VPS52Q8N1B4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VPS52Q8N1B4 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 CYP46A4P-201ENST00000414953 267 ntBASIC16.18■□□□□ 0.18
VPS52Q8N1B4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.18■□□□□ 0.18
VPS52Q8N1B4 CHMP1AP1-201ENST00000445563 662 ntBASIC16.18■□□□□ 0.18
VPS52Q8N1B4 AC100850.1-201ENST00000506768 649 ntBASIC16.18■□□□□ 0.18
VPS52Q8N1B4 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms