Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 AC134698.3-201ENST00000523880 214 ntBASIC17.42■□□□□ 0.38
HLA-DOAP06340 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC17.42■□□□□ 0.38
HLA-DOAP06340 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 AC006486.2-201ENST00000624246 2199 ntBASIC17.42■□□□□ 0.38
HLA-DOAP06340 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HLA-DOAP06340 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 AL590440.2-201ENST00000641973 1595 ntBASIC17.41■□□□□ 0.38
HLA-DOAP06340 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.41■□□□□ 0.38
HLA-DOAP06340 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 AC020922.3-201ENST00000595064 547 ntBASIC17.41■□□□□ 0.38
HLA-DOAP06340 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 AL353770.1-201ENST00000614915 403 ntBASIC17.41■□□□□ 0.38
HLA-DOAP06340 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 KRT8P21-201ENST00000430398 1491 ntBASIC17.41■□□□□ 0.38
HLA-DOAP06340 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC17.41■□□□□ 0.38
HLA-DOAP06340 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HLA-DOAP06340 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 CYP4F23P-201ENST00000593402 1579 ntBASIC17.4■□□□□ 0.38
HLA-DOAP06340 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 AC009093.10-201ENST00000641956 1442 ntBASIC17.4■□□□□ 0.38
HLA-DOAP06340 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HLA-DOAP06340 AGAP7P-201ENST00000582299 2062 ntBASIC17.4■□□□□ 0.38
HLA-DOAP06340 AGAP14-201ENST00000624701 2060 ntBASIC17.4■□□□□ 0.38
HLA-DOAP06340 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC17.4■□□□□ 0.38
HLA-DOAP06340 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC17.4■□□□□ 0.38
HLA-DOAP06340 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC17.4■□□□□ 0.38
HLA-DOAP06340 AC239868.1-201ENST00000369385 493 ntBASIC17.4■□□□□ 0.38
HLA-DOAP06340 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HLA-DOAP06340 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms