Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.12□□□□□ -0.15
UPK1AO00322 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.12□□□□□ -0.15
UPK1AO00322 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
UPK1AO00322 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 AGGF1P1-201ENST00000509500 2073 ntBASIC14.12□□□□□ -0.15
UPK1AO00322 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
UPK1AO00322 ACTBP8-201ENST00000403258 1108 ntBASIC14.12□□□□□ -0.15
UPK1AO00322 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.12□□□□□ -0.15
UPK1AO00322 GIMAP3P-201ENST00000495150 836 ntBASIC14.12□□□□□ -0.15
UPK1AO00322 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.12□□□□□ -0.15
UPK1AO00322 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.12□□□□□ -0.15
UPK1AO00322 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.12□□□□□ -0.15
UPK1AO00322 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.12□□□□□ -0.15
UPK1AO00322 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.12□□□□□ -0.15
UPK1AO00322 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.12□□□□□ -0.15
UPK1AO00322 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.12□□□□□ -0.15
UPK1AO00322 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.12□□□□□ -0.15
UPK1AO00322 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
UPK1AO00322 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
UPK1AO00322 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.12□□□□□ -0.15
UPK1AO00322 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.12□□□□□ -0.15
UPK1AO00322 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
UPK1AO00322 COL6A4P2-202ENST00000504443 2753 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
UPK1AO00322 AC018665.1-201ENST00000622927 1362 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 LRRC59-203ENST00000576448 1531 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
UPK1AO00322 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
UPK1AO00322 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.11□□□□□ -0.15
UPK1AO00322 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
UPK1AO00322 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 AC022137.2-201ENST00000503482 481 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 AC026434.2-201ENST00000506094 1078 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 KRT18P25-201ENST00000508931 1278 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.11□□□□□ -0.15
UPK1AO00322 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.11□□□□□ -0.15
UPK1AO00322 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.11□□□□□ -0.15
UPK1AO00322 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.11□□□□□ -0.15
UPK1AO00322 AC009486.1-201ENST00000569860 813 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.11□□□□□ -0.15
UPK1AO00322 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.11□□□□□ -0.15
UPK1AO00322 INE2-201ENST00000630399 1874 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.11□□□□□ -0.15
UPK1AO00322 AL603764.1-201ENST00000636452 321 ntBASIC14.11□□□□□ -0.15
UPK1AO00322 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
UPK1AO00322 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
UPK1AO00322 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
UPK1AO00322 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms