Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PGGT1BP2-201ENST00000398621 1028 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PFN1P12-201ENST00000455938 534 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PRKXP1-201ENST00000561423 1122 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PPY2P-201ENST00000582808 702 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC020914.3-201ENST00000594712 304 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 KC6-205ENST00000599934 556 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 FERMT2-201ENST00000341590 3338 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 HLA-DPB2-205ENST00000435074 1188 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC243960.2-201ENST00000600996 747 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC105917.1-201ENST00000506637 2539 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LARGE1-202ENST00000397394 4138 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AP001282.1-201ENST00000531301 1499 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL138709.1-201ENST00000614840 1693 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CMTR2-202ENST00000434935 4104 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 LBH-202ENST00000401506 485 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MIR3619-201ENST00000579667 83 ntBASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC4.66□□□□□ -1.66
SYNE1Q8NF91 PHKG1P2-201ENST00000457537 863 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms