Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 HINT1-205ENST00000508488 703 ntTSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC16.17■□□□□ 0.18
HTTP42858 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.17■□□□□ 0.18
HTTP42858 EEF1DP7-201ENST00000580496 513 ntBASIC16.17■□□□□ 0.18
HTTP42858 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.17■□□□□ 0.18
HTTP42858 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HTTP42858 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC16.17■□□□□ 0.18
HTTP42858 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC16.17■□□□□ 0.18
HTTP42858 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
HTTP42858 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.16■□□□□ 0.18
HTTP42858 SLC25A15P1-201ENST00000456738 342 ntBASIC16.16■□□□□ 0.18
HTTP42858 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
HTTP42858 SLC25A15P3-201ENST00000505530 290 ntBASIC16.16■□□□□ 0.18
HTTP42858 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.16■□□□□ 0.18
HTTP42858 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC16.16■□□□□ 0.18
HTTP42858 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC16.16■□□□□ 0.18
HTTP42858 HLA-DMA-202ENST00000395303 1007 ntBASIC16.16■□□□□ 0.18
HTTP42858 OLA1P2-201ENST00000395519 1264 ntBASIC16.16■□□□□ 0.18
HTTP42858 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC16.16■□□□□ 0.18
HTTP42858 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 GGNBP1-204ENST00000613113 887 ntBASIC16.16■□□□□ 0.18
HTTP42858 AL512324.3-201ENST00000619383 882 ntBASIC16.16■□□□□ 0.18
HTTP42858 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HTTP42858 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
HTTP42858 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 AL157823.1-201ENST00000403727 628 ntBASIC16.15■□□□□ 0.18
HTTP42858 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC16.15■□□□□ 0.18
HTTP42858 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC16.15■□□□□ 0.18
HTTP42858 RN7SL578P-201ENST00000477781 283 ntBASIC16.15■□□□□ 0.18
HTTP42858 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC16.15■□□□□ 0.18
HTTP42858 AC010531.8-201ENST00000623341 685 ntBASIC16.15■□□□□ 0.18
HTTP42858 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.15■□□□□ 0.18
HTTP42858 TEKT4P2-202ENST00000559466 1312 ntBASIC16.15■□□□□ 0.18
HTTP42858 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.15■□□□□ 0.18
HTTP42858 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.15■□□□□ 0.18
HTTP42858 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 AL080243.1-201ENST00000423293 1060 ntBASIC16.15■□□□□ 0.18
HTTP42858 AC136604.1-202ENST00000425471 771 ntBASIC16.15■□□□□ 0.18
HTTP42858 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC16.15■□□□□ 0.18
HTTP42858 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC16.15■□□□□ 0.18
HTTP42858 CSTP2-201ENST00000610599 398 ntBASIC16.15■□□□□ 0.18
HTTP42858 AC090386.2-201ENST00000623010 1039 ntBASIC16.15■□□□□ 0.18
HTTP42858 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.15■□□□□ 0.18
HTTP42858 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 AC232323.1-201ENST00000540724 2099 ntBASIC16.15■□□□□ 0.18
HTTP42858 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.15■□□□□ 0.18
HTTP42858 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
HTTP42858 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.15■□□□□ 0.18
HTTP42858 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC16.15■□□□□ 0.18
HTTP42858 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HTTP42858 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.14■□□□□ 0.18
HTTP42858 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
HTTP42858 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC16.14■□□□□ 0.18
HTTP42858 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
HTTP42858 VENTXP3-201ENST00000546480 773 ntBASIC16.14■□□□□ 0.18
HTTP42858 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC16.14■□□□□ 0.18
HTTP42858 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
HTTP42858 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HTTP42858 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 ODCP-201ENST00000459650 1639 ntBASIC16.14■□□□□ 0.17
HTTP42858 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
HTTP42858 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HTTP42858 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.14■□□□□ 0.17
HTTP42858 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms