Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC14.29□□□□□ -0.12
MSX2P35548 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
MSX2P35548 AL118506.1-201ENST00000601296 3082 ntBASIC14.29□□□□□ -0.12
MSX2P35548 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 TP73-211ENST00000604074 4806 ntTSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 AC004241.5-201ENST00000623870 2448 ntBASIC14.29□□□□□ -0.12
MSX2P35548 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 RPL13P2-201ENST00000440687 659 ntBASIC14.29□□□□□ -0.12
MSX2P35548 KRT18P43-201ENST00000469825 1281 ntBASIC14.29□□□□□ -0.12
MSX2P35548 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 SLC25A1P1-201ENST00000528351 927 ntBASIC14.29□□□□□ -0.12
MSX2P35548 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.29□□□□□ -0.12
MSX2P35548 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
MSX2P35548 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 AC020910.6-201ENST00000623084 1459 ntBASIC14.29□□□□□ -0.12
MSX2P35548 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.29□□□□□ -0.12
MSX2P35548 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX2P35548 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX2P35548 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
MSX2P35548 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC14.28□□□□□ -0.12
MSX2P35548 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.28□□□□□ -0.12
MSX2P35548 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
MSX2P35548 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 YBX2P1-201ENST00000394192 760 ntBASIC14.28□□□□□ -0.12
MSX2P35548 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 ZNF259P1-201ENST00000407656 1365 ntBASIC14.28□□□□□ -0.12
MSX2P35548 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.28□□□□□ -0.12
MSX2P35548 AC005237.2-201ENST00000434368 219 ntBASIC14.28□□□□□ -0.12
MSX2P35548 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
MSX2P35548 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
MSX2P35548 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.28□□□□□ -0.12
MSX2P35548 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.28□□□□□ -0.12
MSX2P35548 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
MSX2P35548 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC14.28□□□□□ -0.12
MSX2P35548 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.28□□□□□ -0.12
MSX2P35548 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.28□□□□□ -0.12
MSX2P35548 AL079307.3-201ENST00000556114 283 ntBASIC14.28□□□□□ -0.12
MSX2P35548 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.28□□□□□ -0.12
MSX2P35548 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.28□□□□□ -0.12
MSX2P35548 AC015818.8-201ENST00000587907 1519 ntBASIC14.28□□□□□ -0.12
MSX2P35548 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
MSX2P35548 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
MSX2P35548 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.28□□□□□ -0.12
MSX2P35548 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
MSX2P35548 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX2P35548 AGAP10P-201ENST00000454844 2418 ntBASIC14.27□□□□□ -0.12
MSX2P35548 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms