Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 POM121L8P-201ENST00000417732 1281 ntBASIC13.7□□□□□ -0.22
MSX1P28360 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 AC006033.1-201ENST00000440505 426 ntBASIC13.7□□□□□ -0.22
MSX1P28360 GOLGA2P4-201ENST00000441462 777 ntBASIC13.7□□□□□ -0.22
MSX1P28360 POM121L9P-203ENST00000441984 1285 ntBASIC13.7□□□□□ -0.22
MSX1P28360 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.7□□□□□ -0.22
MSX1P28360 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.7□□□□□ -0.22
MSX1P28360 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.7□□□□□ -0.22
MSX1P28360 SULT1A1-211ENST00000569554 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
MSX1P28360 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
MSX1P28360 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
MSX1P28360 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.7□□□□□ -0.22
MSX1P28360 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
MSX1P28360 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
MSX1P28360 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 KRT8P13-201ENST00000463294 1010 ntBASIC13.69□□□□□ -0.22
MSX1P28360 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.69□□□□□ -0.22
MSX1P28360 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.69□□□□□ -0.22
MSX1P28360 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 AC138466.3-201ENST00000619983 221 ntBASIC13.69□□□□□ -0.22
MSX1P28360 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.69□□□□□ -0.22
MSX1P28360 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.69□□□□□ -0.22
MSX1P28360 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
MSX1P28360 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
MSX1P28360 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms