Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL11A1P12107 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL11A1P12107 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL11A1P12107 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.52■□□□□ 0.23
COL11A1P12107 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
COL11A1P12107 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL11A1P12107 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL11A1P12107 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.52■□□□□ 0.23
COL11A1P12107 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.52■□□□□ 0.23
COL11A1P12107 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COL11A1P12107 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC16.52■□□□□ 0.23
COL11A1P12107 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC16.52■□□□□ 0.23
COL11A1P12107 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.52■□□□□ 0.23
COL11A1P12107 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COL11A1P12107 AC104640.1-201ENST00000562617 2109 ntBASIC16.52■□□□□ 0.23
COL11A1P12107 MIR5196-201ENST00000578146 115 ntBASIC16.52■□□□□ 0.23
COL11A1P12107 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
COL11A1P12107 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC16.52■□□□□ 0.23
COL11A1P12107 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
COL11A1P12107 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 HLA-DMA-203ENST00000395305 777 ntBASIC16.51■□□□□ 0.23
COL11A1P12107 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.51■□□□□ 0.23
COL11A1P12107 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC16.51■□□□□ 0.23
COL11A1P12107 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 RGS5-216ENST00000449680 788 ntTSL 3 BASIC16.51■□□□□ 0.23
COL11A1P12107 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 AC007952.4-201ENST00000573866 637 ntBASIC16.51■□□□□ 0.23
COL11A1P12107 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC16.51■□□□□ 0.23
COL11A1P12107 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC16.51■□□□□ 0.23
COL11A1P12107 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC16.51■□□□□ 0.23
COL11A1P12107 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COL11A1P12107 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COL11A1P12107 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COL11A1P12107 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL11A1P12107 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
COL11A1P12107 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.5■□□□□ 0.23
COL11A1P12107 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.5■□□□□ 0.23
COL11A1P12107 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 RN7SKP109-201ENST00000410592 316 ntBASIC16.5■□□□□ 0.23
COL11A1P12107 AC012362.1-201ENST00000434906 739 ntBASIC16.5■□□□□ 0.23
COL11A1P12107 ERP29P1-201ENST00000442902 706 ntBASIC16.5■□□□□ 0.23
COL11A1P12107 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC16.5■□□□□ 0.23
COL11A1P12107 RNA5SP417-201ENST00000516459 108 ntBASIC16.5■□□□□ 0.23
COL11A1P12107 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.5■□□□□ 0.23
COL11A1P12107 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC16.5■□□□□ 0.23
COL11A1P12107 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.5■□□□□ 0.23
COL11A1P12107 AC009560.1-201ENST00000620208 434 ntBASIC16.5■□□□□ 0.23
COL11A1P12107 CCT8L1P-201ENST00000465400 1674 ntBASIC16.5■□□□□ 0.23
COL11A1P12107 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.5■□□□□ 0.23
COL11A1P12107 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.5■□□□□ 0.23
COL11A1P12107 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.5■□□□□ 0.23
COL11A1P12107 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
COL11A1P12107 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
COL11A1P12107 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.49■□□□□ 0.23
COL11A1P12107 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.49■□□□□ 0.23
COL11A1P12107 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL11A1P12107 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC16.49■□□□□ 0.23
COL11A1P12107 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC16.49■□□□□ 0.23
COL11A1P12107 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC16.49■□□□□ 0.23
COL11A1P12107 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC16.49■□□□□ 0.23
COL11A1P12107 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC16.49■□□□□ 0.23
COL11A1P12107 AL133467.4-201ENST00000602953 725 ntBASIC16.49■□□□□ 0.23
COL11A1P12107 AC103810.10-201ENST00000606504 343 ntBASIC16.49■□□□□ 0.23
COL11A1P12107 MIR6858-201ENST00000620733 67 ntBASIC16.49■□□□□ 0.23
COL11A1P12107 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL11A1P12107 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL11A1P12107 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms