Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 MGA-212ENST00000619521 1496 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
RNF40O75150 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
RNF40O75150 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 MTHFR-210ENST00000641407 2387 ntBASIC16.22■□□□□ 0.19
RNF40O75150 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF40O75150 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 AZGP1P1-201ENST00000411909 902 ntBASIC16.22■□□□□ 0.19
RNF40O75150 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF40O75150 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 COA4-204ENST00000541455 1038 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF40O75150 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.22■□□□□ 0.19
RNF40O75150 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
RNF40O75150 AL391069.4-201ENST00000609583 481 ntBASIC16.22■□□□□ 0.19
RNF40O75150 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 AC099521.3-201ENST00000624251 2938 ntBASIC16.22■□□□□ 0.19
RNF40O75150 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
RNF40O75150 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
RNF40O75150 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
RNF40O75150 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF40O75150 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 AL691432.1-201ENST00000596308 1422 ntBASIC16.21■□□□□ 0.19
RNF40O75150 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RNF40O75150 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 FAM86MP-201ENST00000340703 885 ntBASIC16.21■□□□□ 0.19
RNF40O75150 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
RNF40O75150 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 AC004987.2-201ENST00000395959 1148 ntBASIC16.21■□□□□ 0.19
RNF40O75150 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.21■□□□□ 0.19
RNF40O75150 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.21■□□□□ 0.19
RNF40O75150 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
RNF40O75150 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.21■□□□□ 0.19
RNF40O75150 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.21■□□□□ 0.19
RNF40O75150 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.21■□□□□ 0.19
RNF40O75150 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.21■□□□□ 0.19
RNF40O75150 AC233724.13-201ENST00000598383 410 ntBASIC16.21■□□□□ 0.19
RNF40O75150 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.21■□□□□ 0.19
RNF40O75150 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RNF40O75150 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RNF40O75150 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
RNF40O75150 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
RNF40O75150 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms