Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CACNA1AO00555 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CACNA1AO00555 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.14■■□□□ 1.13
CACNA1AO00555 AC009102.2-201ENST00000606772 1639 ntBASIC22.14■■□□□ 1.13
CACNA1AO00555 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
CACNA1AO00555 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.14■■□□□ 1.13
CACNA1AO00555 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CACNA1AO00555 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1AO00555 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.13■■□□□ 1.13
CACNA1AO00555 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1AO00555 HSCB-202ENST00000398941 955 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1AO00555 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.13■■□□□ 1.13
CACNA1AO00555 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1AO00555 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.13■■□□□ 1.13
CACNA1AO00555 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.13■■□□□ 1.13
CACNA1AO00555 WWOX-218ENST00000627394 894 ntTSL 5 BASIC22.13■■□□□ 1.13
CACNA1AO00555 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CACNA1AO00555 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.12■■□□□ 1.13
CACNA1AO00555 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC22.12■■□□□ 1.13
CACNA1AO00555 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.12■■□□□ 1.13
CACNA1AO00555 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC22.12■■□□□ 1.13
CACNA1AO00555 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CACNA1AO00555 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CACNA1AO00555 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1AO00555 GUSBP6-202ENST00000438529 1198 ntBASIC22.11■■□□□ 1.13
CACNA1AO00555 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.11■■□□□ 1.13
CACNA1AO00555 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CACNA1AO00555 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.11■■□□□ 1.13
CACNA1AO00555 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1AO00555 IGHV3-19-201ENST00000521488 291 ntBASIC22.1■■□□□ 1.13
CACNA1AO00555 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.1■■□□□ 1.13
CACNA1AO00555 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.1■■□□□ 1.13
CACNA1AO00555 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1AO00555 BID-214ENST00000617586 542 ntTSL 5 BASIC22.1■■□□□ 1.13
CACNA1AO00555 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1AO00555 AC069152.1-201ENST00000438030 544 ntBASIC22.1■■□□□ 1.13
CACNA1AO00555 FAM201B-201ENST00000458407 597 ntBASIC22.1■■□□□ 1.13
CACNA1AO00555 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.1■■□□□ 1.13
CACNA1AO00555 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1AO00555 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1AO00555 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.1■■□□□ 1.13
CACNA1AO00555 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
CACNA1AO00555 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.1■■□□□ 1.13
CACNA1AO00555 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CACNA1AO00555 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CACNA1AO00555 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
CACNA1AO00555 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
CACNA1AO00555 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CACNA1AO00555 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC22.09■■□□□ 1.13
CACNA1AO00555 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.09■■□□□ 1.13
CACNA1AO00555 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC22.09■■□□□ 1.13
CACNA1AO00555 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
CACNA1AO00555 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC22.09■■□□□ 1.13
CACNA1AO00555 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
CACNA1AO00555 AC126544.1-201ENST00000580842 1059 ntBASIC22.09■■□□□ 1.13
CACNA1AO00555 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC22.08■■□□□ 1.13
CACNA1AO00555 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC22.08■■□□□ 1.13
CACNA1AO00555 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CACNA1AO00555 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
CACNA1AO00555 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
CACNA1AO00555 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.08■■□□□ 1.12
CACNA1AO00555 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.08■■□□□ 1.12
CACNA1AO00555 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.07■■□□□ 1.12
CACNA1AO00555 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CACNA1AO00555 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CACNA1AO00555 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CACNA1AO00555 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC22.07■■□□□ 1.12
CACNA1AO00555 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
CACNA1AO00555 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
CACNA1AO00555 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
CACNA1AO00555 AC073210.2-201ENST00000430369 194 ntBASIC22.07■■□□□ 1.12
CACNA1AO00555 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CACNA1AO00555 TBCB-214ENST00000629269 413 ntTSL 5 BASIC22.07■■□□□ 1.12
CACNA1AO00555 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
CACNA1AO00555 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1AO00555 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC22.06■■□□□ 1.12
CACNA1AO00555 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1AO00555 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1AO00555 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC22.06■■□□□ 1.12
CACNA1AO00555 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
CACNA1AO00555 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC22.06■■□□□ 1.12
CACNA1AO00555 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1AO00555 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1AO00555 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
CACNA1AO00555 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1AO00555 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22.06■■□□□ 1.12
CACNA1AO00555 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
CACNA1AO00555 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1AO00555 AL449106.1-201ENST00000608517 1980 ntBASIC22.05■■□□□ 1.12
CACNA1AO00555 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC22.05■■□□□ 1.12
CACNA1AO00555 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1AO00555 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1AO00555 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1AO00555 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1AO00555 AP004607.4-201ENST00000530158 1459 ntBASIC22.05■■□□□ 1.12
CACNA1AO00555 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1AO00555 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC22.05■■□□□ 1.12
CACNA1AO00555 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1AO00555 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.04■■□□□ 1.12
CACNA1AO00555 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms