Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 AC138028.6-201ENST00000616106 1482 ntBASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP4AQ9BY43 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 POR-201ENST00000394893 2532 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 AC005740.2-201ENST00000511085 419 ntBASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 AC020914.3-201ENST00000594712 304 ntBASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP4AQ9BY43 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 AC103988.2-201ENST00000561804 725 ntBASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 MIR6720-201ENST00000611664 98 ntBASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 MIR6787-201ENST00000616675 61 ntBASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 AC004923.1-202ENST00000642106 209 ntBASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CHMP4AQ9BY43 AL590440.2-201ENST00000641973 1595 ntBASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 AC139712.1-201ENST00000378256 1875 ntBASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 C1R-202ENST00000536053 2347 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 AGER-203ENST00000375065 665 ntTSL 2 BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CHMP4AQ9BY43 HNRNPA1P32-201ENST00000396326 963 ntBASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms