Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 FES-203ENST00000394302 2133 ntTSL 5 BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 KRT8P19-201ENST00000551916 1455 ntBASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
RPAP1Q9BWH6 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 NKAIN1P1-201ENST00000435754 582 ntBASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 UPF3AP2-201ENST00000457924 1132 ntBASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.47
RPAP1Q9BWH6 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 AP001267.2-201ENST00000532619 2086 ntBASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 KRTAP19-9P-201ENST00000421795 191 ntBASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 TLE1P1-201ENST00000422965 589 ntBASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 FTLP10-202ENST00000505798 471 ntBASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 FOS-206ENST00000555347 1280 ntTSL 2 BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 CLUHP2-201ENST00000426660 1303 ntBASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RPAP1Q9BWH6 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 EIF4HP1-201ENST00000453115 687 ntBASIC18■□□□□ 0.47
RPAP1Q9BWH6 AC022217.1-201ENST00000521069 738 ntBASIC18■□□□□ 0.47
RPAP1Q9BWH6 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC18■□□□□ 0.47
RPAP1Q9BWH6 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 RETN-203ENST00000629642 400 ntTSL 5 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
RPAP1Q9BWH6 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC18■□□□□ 0.47
RPAP1Q9BWH6 KRT8P4-201ENST00000509735 1454 ntBASIC17.99■□□□□ 0.47
RPAP1Q9BWH6 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
RPAP1Q9BWH6 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RPAP1Q9BWH6 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms