Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 AC107373.2-201ENST00000607735 490 ntBASIC13.55□□□□□ -0.24
USB1Q9BQ65 BX539320.1-201ENST00000623759 877 ntBASIC13.55□□□□□ -0.24
USB1Q9BQ65 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.54□□□□□ -0.24
USB1Q9BQ65 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 AL138799.1-201ENST00000448213 1675 ntBASIC13.54□□□□□ -0.24
USB1Q9BQ65 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 LINC00469-201ENST00000321800 708 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 AL157385.1-201ENST00000446973 268 ntBASIC13.54□□□□□ -0.24
USB1Q9BQ65 AC114812.1-204ENST00000449669 728 ntBASIC13.54□□□□□ -0.24
USB1Q9BQ65 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 USP32P1-208ENST00000506594 1164 ntBASIC13.54□□□□□ -0.24
USB1Q9BQ65 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 AL008721.1-201ENST00000609964 604 ntBASIC13.54□□□□□ -0.24
USB1Q9BQ65 AL603764.1-201ENST00000636452 321 ntBASIC13.54□□□□□ -0.24
USB1Q9BQ65 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
USB1Q9BQ65 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.54□□□□□ -0.24
USB1Q9BQ65 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.53□□□□□ -0.24
USB1Q9BQ65 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
USB1Q9BQ65 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms