Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHMP4CQ96CF2 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 ACKR1-201ENST00000368121 1240 ntBASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 BOLA2P3-201ENST00000404566 256 ntBASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 MIR4538-201ENST00000581377 78 ntBASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHMP4CQ96CF2 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 MIR1202-201ENST00000408529 83 ntBASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AC025279.2-201ENST00000569730 653 ntBASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AL138709.1-201ENST00000614840 1693 ntBASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AC138951.2-201ENST00000623455 1161 ntBASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHMP4CQ96CF2 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 AC018442.1-201ENST00000421439 2061 ntBASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 AC004466.1-201ENST00000599515 1080 ntBASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.84■□□□□ 0.45
CHMP4CQ96CF2 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms