Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 HSPA7-201ENST00000445535 1927 ntBASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
ZNF549Q6P9A3 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 INE2-201ENST00000630399 1874 ntBASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 POM121L8P-201ENST00000417732 1281 ntBASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 POM121L9P-203ENST00000441984 1285 ntBASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 CLUHP2-201ENST00000426660 1303 ntBASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
ZNF549Q6P9A3 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 RN7SL837P-201ENST00000463010 287 ntBASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AC106760.1-201ENST00000508690 800 ntBASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AC068587.3-201ENST00000526613 355 ntBASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 TDH-203ENST00000531764 1110 ntBASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AC131206.1-201ENST00000538078 1211 ntBASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AC092364.2-202ENST00000597012 1073 ntBASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.8□□□□□ -0.04
ZNF549Q6P9A3 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms