Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 AC239868.1-201ENST00000369385 493 ntBASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 LBH-202ENST00000401506 485 ntTSL 3 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 FTLP1-201ENST00000449155 526 ntBASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 RN7SL555P-201ENST00000584742 339 ntBASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 AJ011931.1-201ENST00000618749 2492 ntBASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 AC018529.2-202ENST00000611482 3087 ntBASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM1Q2M3G4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 AC073352.2-201ENST00000609385 439 ntBASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 AC092384.3-202ENST00000564646 2873 ntBASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM1Q2M3G4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 MRPL37P1-201ENST00000592451 1337 ntBASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 RPL8P2-201ENST00000430538 502 ntBASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 OR2R1P-201ENST00000441404 914 ntBASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 RBM8B-201ENST00000555532 525 ntBASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 AC026803.1-201ENST00000569130 274 ntBASIC17.22■□□□□ 0.35
SHROOM1Q2M3G4 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms