Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC14.65□□□□□ -0.06
CXCL12P48061 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC14.65□□□□□ -0.06
CXCL12P48061 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC14.65□□□□□ -0.06
CXCL12P48061 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 AC073592.2-201ENST00000623062 780 ntBASIC14.65□□□□□ -0.06
CXCL12P48061 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.65□□□□□ -0.06
CXCL12P48061 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.65□□□□□ -0.06
CXCL12P48061 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 AC092850.2-201ENST00000623821 2697 ntBASIC14.65□□□□□ -0.06
CXCL12P48061 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.65□□□□□ -0.06
CXCL12P48061 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.07
CXCL12P48061 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL12P48061 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.64□□□□□ -0.07
CXCL12P48061 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL12P48061 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.64□□□□□ -0.07
CXCL12P48061 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CXCL12P48061 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC14.64□□□□□ -0.07
CXCL12P48061 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC14.64□□□□□ -0.07
CXCL12P48061 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.64□□□□□ -0.07
CXCL12P48061 KRT8P1-201ENST00000557533 1207 ntBASIC14.64□□□□□ -0.07
CXCL12P48061 DNM1P51-201ENST00000558149 522 ntBASIC14.64□□□□□ -0.07
CXCL12P48061 RN7SL596P-201ENST00000582123 288 ntBASIC14.64□□□□□ -0.07
CXCL12P48061 AC005041.3-201ENST00000606287 649 ntBASIC14.64□□□□□ -0.07
CXCL12P48061 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CXCL12P48061 ETV2-207ENST00000619399 994 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL12P48061 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.64□□□□□ -0.07
CXCL12P48061 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.64□□□□□ -0.07
CXCL12P48061 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.64□□□□□ -0.07
CXCL12P48061 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.64□□□□□ -0.07
CXCL12P48061 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CXCL12P48061 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.64□□□□□ -0.07
CXCL12P48061 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 AC009093.10-201ENST00000641956 1442 ntBASIC14.64□□□□□ -0.07
CXCL12P48061 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL12P48061 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
CXCL12P48061 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.64□□□□□ -0.07
CXCL12P48061 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL12P48061 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
CXCL12P48061 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.63□□□□□ -0.07
CXCL12P48061 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.63□□□□□ -0.07
CXCL12P48061 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.63□□□□□ -0.07
CXCL12P48061 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.63□□□□□ -0.07
CXCL12P48061 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC14.63□□□□□ -0.07
CXCL12P48061 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
CXCL12P48061 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.63□□□□□ -0.07
CXCL12P48061 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.63□□□□□ -0.07
CXCL12P48061 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL12P48061 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CXCL12P48061 AC073869.2-201ENST00000417338 1026 ntBASIC14.63□□□□□ -0.07
CXCL12P48061 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC14.63□□□□□ -0.07
CXCL12P48061 AL512306.1-201ENST00000432698 848 ntBASIC14.63□□□□□ -0.07
CXCL12P48061 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC14.63□□□□□ -0.07
CXCL12P48061 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms