Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 PCDHA14-201ENST00000506751 2298 ntBASIC17.04■□□□□ 0.32
SCN4AP35499 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SCN4AP35499 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SCN4AP35499 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.04■□□□□ 0.32
SCN4AP35499 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 FAU-201ENST00000279259 461 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SCN4AP35499 AL121949.3-201ENST00000406684 385 ntBASIC17.04■□□□□ 0.32
SCN4AP35499 PGAM1P11-201ENST00000416729 680 ntBASIC17.04■□□□□ 0.32
SCN4AP35499 KRT18P62-201ENST00000446618 1287 ntBASIC17.04■□□□□ 0.32
SCN4AP35499 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 PRSS3P1-201ENST00000503996 742 ntBASIC17.04■□□□□ 0.32
SCN4AP35499 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC17.04■□□□□ 0.32
SCN4AP35499 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.04■□□□□ 0.32
SCN4AP35499 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.04■□□□□ 0.32
SCN4AP35499 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC17.04■□□□□ 0.32
SCN4AP35499 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.03■□□□□ 0.32
SCN4AP35499 SIRPB3P-201ENST00000340424 1216 ntBASIC17.03■□□□□ 0.32
SCN4AP35499 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC17.03■□□□□ 0.32
SCN4AP35499 AC005777.1-201ENST00000588332 187 ntBASIC17.03■□□□□ 0.32
SCN4AP35499 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SCN4AP35499 AL139384.1-201ENST00000612143 3047 ntBASIC17.03■□□□□ 0.32
SCN4AP35499 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.03■□□□□ 0.32
SCN4AP35499 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SCN4AP35499 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SCN4AP35499 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 AC006504.5-208ENST00000588784 2401 ntBASIC17.03■□□□□ 0.32
SCN4AP35499 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.03■□□□□ 0.32
SCN4AP35499 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SCN4AP35499 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC17.03■□□□□ 0.32
SCN4AP35499 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 OLA1P2-201ENST00000395519 1264 ntBASIC17.03■□□□□ 0.32
SCN4AP35499 LINC01656-201ENST00000415702 630 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.03■□□□□ 0.32
SCN4AP35499 RN7SL846P-201ENST00000467429 292 ntBASIC17.03■□□□□ 0.32
SCN4AP35499 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC17.03■□□□□ 0.32
SCN4AP35499 AC010491.1-201ENST00000563101 2797 ntBASIC17.03■□□□□ 0.32
SCN4AP35499 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SCN4AP35499 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SCN4AP35499 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SCN4AP35499 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SCN4AP35499 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SCN4AP35499 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SCN4AP35499 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
SCN4AP35499 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SCN4AP35499 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SCN4AP35499 PDXDC2P-206ENST00000534700 1315 ntBASIC17.02■□□□□ 0.32
SCN4AP35499 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SCN4AP35499 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SCN4AP35499 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC17.02■□□□□ 0.32
SCN4AP35499 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SCN4AP35499 DKFZP434H168-201ENST00000567381 1905 ntBASIC17.02■□□□□ 0.32
SCN4AP35499 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SCN4AP35499 ABCD1P4-201ENST00000399687 604 ntBASIC17.02■□□□□ 0.31
SCN4AP35499 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC17.02■□□□□ 0.31
SCN4AP35499 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC17.02■□□□□ 0.31
SCN4AP35499 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC17.02■□□□□ 0.31
SCN4AP35499 AC078814.4-201ENST00000546650 327 ntBASIC17.02■□□□□ 0.31
SCN4AP35499 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC17.02■□□□□ 0.31
SCN4AP35499 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC17.02■□□□□ 0.31
SCN4AP35499 HNRNPA1P5-201ENST00000558213 966 ntBASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms