Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SHOX2O60902 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.94□□□□□ -0.02
SHOX2O60902 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
SHOX2O60902 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.94□□□□□ -0.02
SHOX2O60902 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
SHOX2O60902 MRPL3P1-201ENST00000400109 1033 ntBASIC14.94□□□□□ -0.02
SHOX2O60902 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.94□□□□□ -0.02
SHOX2O60902 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.94□□□□□ -0.02
SHOX2O60902 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.94□□□□□ -0.02
SHOX2O60902 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.94□□□□□ -0.02
SHOX2O60902 SLED1-202ENST00000512051 380 ntBASIC14.94□□□□□ -0.02
SHOX2O60902 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC14.94□□□□□ -0.02
SHOX2O60902 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.94□□□□□ -0.02
SHOX2O60902 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.94□□□□□ -0.02
SHOX2O60902 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC14.94□□□□□ -0.02
SHOX2O60902 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.94□□□□□ -0.02
SHOX2O60902 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.94□□□□□ -0.02
SHOX2O60902 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SHOX2O60902 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.94□□□□□ -0.02
SHOX2O60902 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SHOX2O60902 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
SHOX2O60902 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 SLC35A4-203ENST00000612662 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 AC115284.2-201ENST00000624646 2054 ntBASIC14.93□□□□□ -0.02
SHOX2O60902 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 AC060814.4-201ENST00000594169 2163 ntBASIC14.93□□□□□ -0.02
SHOX2O60902 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 AP003969.2-201ENST00000623739 2275 ntBASIC14.93□□□□□ -0.02
SHOX2O60902 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
SHOX2O60902 AC074338.1-201ENST00000416825 156 ntBASIC14.93□□□□□ -0.02
SHOX2O60902 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.93□□□□□ -0.02
SHOX2O60902 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.93□□□□□ -0.02
SHOX2O60902 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.93□□□□□ -0.02
SHOX2O60902 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 AC018845.2-201ENST00000568326 409 ntBASIC14.93□□□□□ -0.02
SHOX2O60902 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.93□□□□□ -0.02
SHOX2O60902 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 AC015819.3-201ENST00000624305 2674 ntBASIC14.93□□□□□ -0.02
SHOX2O60902 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
SHOX2O60902 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
SHOX2O60902 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC14.93□□□□□ -0.02
SHOX2O60902 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
SHOX2O60902 TRIM80P-201ENST00000455685 2848 ntBASIC14.93□□□□□ -0.02
SHOX2O60902 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.92□□□□□ -0.02
SHOX2O60902 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
SHOX2O60902 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 AL359845.1-201ENST00000458202 1648 ntBASIC14.92□□□□□ -0.02
SHOX2O60902 AC026271.4-201ENST00000578214 1833 ntBASIC14.92□□□□□ -0.02
SHOX2O60902 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC14.92□□□□□ -0.02
SHOX2O60902 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SHOX2O60902 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms