Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 AL161670.2-201ENST00000557650 1227 ntBASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 AC079336.7-201ENST00000623428 1078 ntBASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 CDK7-214ENST00000626796 358 ntTSL 5 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PAAF1Q9BRP4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 PDIA3P2-201ENST00000428073 158 ntBASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 AC092135.3-201ENST00000624151 1846 ntBASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 AL590440.2-201ENST00000641973 1595 ntBASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.79■□□□□ 0.12
PAAF1Q9BRP4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 AC078875.1-201ENST00000431907 724 ntBASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 AC073150.1-201ENST00000450406 1084 ntBASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 AL035414.1-201ENST00000451327 857 ntBASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 AC020922.3-201ENST00000595064 547 ntBASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.78■□□□□ 0.12
PAAF1Q9BRP4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PAAF1Q9BRP4 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 145 ms