Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC006001.1-201ENST00000325130 474 ntBASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 MIR1909-201ENST00000411312 80 ntBASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 POM121L8P-201ENST00000417732 1281 ntBASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 FAM197Y7-201ENST00000432892 766 ntBASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 POM121L9P-203ENST00000441984 1285 ntBASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 MIR6805-201ENST00000615055 62 ntBASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 ATP5G2P4-201ENST00000442175 420 ntBASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 AC022210.1-201ENST00000449856 793 ntBASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 MESTP3-201ENST00000503460 968 ntBASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 AC078819.1-201ENST00000547454 765 ntBASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 AC012085.1-201ENST00000548270 765 ntBASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 MIR6775-201ENST00000617557 69 ntBASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 AC006453.4-201ENST00000636949 1252 ntBASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
NUP54Q7Z3B4 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms