Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.54■□□□□ 0.4
MRE11P49959 AC023141.13-201ENST00000604991 943 ntBASIC17.54■□□□□ 0.4
MRE11P49959 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.54■□□□□ 0.4
MRE11P49959 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.54■□□□□ 0.4
MRE11P49959 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
MRE11P49959 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC17.54■□□□□ 0.4
MRE11P49959 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
MRE11P49959 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.54■□□□□ 0.4
MRE11P49959 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MRE11P49959 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MRE11P49959 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
MRE11P49959 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MRE11P49959 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MRE11P49959 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MRE11P49959 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MRE11P49959 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
MRE11P49959 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
MRE11P49959 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC17.53■□□□□ 0.4
MRE11P49959 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.53■□□□□ 0.4
MRE11P49959 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC17.53■□□□□ 0.4
MRE11P49959 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
MRE11P49959 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
MRE11P49959 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
MRE11P49959 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
MRE11P49959 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC17.53■□□□□ 0.4
MRE11P49959 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
MRE11P49959 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.53■□□□□ 0.4
MRE11P49959 AC069335.1-201ENST00000489972 472 ntBASIC17.53■□□□□ 0.4
MRE11P49959 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.53■□□□□ 0.4
MRE11P49959 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
MRE11P49959 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.53■□□□□ 0.4
MRE11P49959 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.53■□□□□ 0.4
MRE11P49959 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.53■□□□□ 0.4
MRE11P49959 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 AC068137.2-201ENST00000605408 478 ntBASIC17.53■□□□□ 0.4
MRE11P49959 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 BEND3P3-201ENST00000611030 2440 ntBASIC17.53■□□□□ 0.4
MRE11P49959 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
MRE11P49959 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
MRE11P49959 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.53■□□□□ 0.4
MRE11P49959 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
MRE11P49959 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MRE11P49959 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC17.52■□□□□ 0.4
MRE11P49959 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 AC023794.5-201ENST00000564380 2157 ntBASIC17.52■□□□□ 0.4
MRE11P49959 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 AC068760.1-201ENST00000493579 1953 ntBASIC17.52■□□□□ 0.4
MRE11P49959 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.52■□□□□ 0.4
MRE11P49959 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 MIR658-201ENST00000385210 100 ntBASIC17.52■□□□□ 0.4
MRE11P49959 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.52■□□□□ 0.4
MRE11P49959 BCYRN1-201ENST00000418539 200 ntBASIC17.52■□□□□ 0.4
MRE11P49959 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.52■□□□□ 0.4
MRE11P49959 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.52■□□□□ 0.4
MRE11P49959 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC17.52■□□□□ 0.4
MRE11P49959 PHKG1P2-201ENST00000457537 863 ntBASIC17.52■□□□□ 0.4
MRE11P49959 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC17.52■□□□□ 0.4
MRE11P49959 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.52■□□□□ 0.4
MRE11P49959 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
MRE11P49959 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.52■□□□□ 0.4
MRE11P49959 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MRE11P49959 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.52■□□□□ 0.4
MRE11P49959 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
MRE11P49959 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms