Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.67□□□□□ -0.06
CXCL12P48061 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC14.67□□□□□ -0.06
CXCL12P48061 SERF2-206ENST00000409291 807 ntTSL 3 BASIC14.67□□□□□ -0.06
CXCL12P48061 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC14.67□□□□□ -0.06
CXCL12P48061 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.67□□□□□ -0.06
CXCL12P48061 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC14.67□□□□□ -0.06
CXCL12P48061 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CXCL12P48061 OR2R1P-201ENST00000441404 914 ntBASIC14.67□□□□□ -0.06
CXCL12P48061 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC14.67□□□□□ -0.06
CXCL12P48061 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.67□□□□□ -0.06
CXCL12P48061 DPY19L2P5-201ENST00000456300 331 ntBASIC14.67□□□□□ -0.06
CXCL12P48061 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC14.67□□□□□ -0.06
CXCL12P48061 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.67□□□□□ -0.06
CXCL12P48061 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC14.67□□□□□ -0.06
CXCL12P48061 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC14.67□□□□□ -0.06
CXCL12P48061 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC14.67□□□□□ -0.06
CXCL12P48061 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC14.67□□□□□ -0.06
CXCL12P48061 AP000845.1-201ENST00000581677 2131 ntBASIC14.67□□□□□ -0.06
CXCL12P48061 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC14.67□□□□□ -0.06
CXCL12P48061 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CXCL12P48061 F10-203ENST00000409306 1450 ntTSL 3 BASIC14.67□□□□□ -0.06
CXCL12P48061 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.67□□□□□ -0.06
CXCL12P48061 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.67□□□□□ -0.06
CXCL12P48061 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CXCL12P48061 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CXCL12P48061 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.66□□□□□ -0.06
CXCL12P48061 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
CXCL12P48061 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CXCL12P48061 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.66□□□□□ -0.06
CXCL12P48061 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 RNA5SP417-201ENST00000516459 108 ntBASIC14.66□□□□□ -0.06
CXCL12P48061 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC14.66□□□□□ -0.06
CXCL12P48061 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 AC011247.3-201ENST00000603297 438 ntBASIC14.66□□□□□ -0.06
CXCL12P48061 AC006158.1-201ENST00000610661 249 ntBASIC14.66□□□□□ -0.06
CXCL12P48061 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CXCL12P48061 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.66□□□□□ -0.06
CXCL12P48061 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.66□□□□□ -0.06
CXCL12P48061 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CXCL12P48061 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CXCL12P48061 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CXCL12P48061 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.65□□□□□ -0.06
CXCL12P48061 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.65□□□□□ -0.06
CXCL12P48061 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
CXCL12P48061 AL513523.2-202ENST00000427283 2040 ntBASIC14.65□□□□□ -0.06
CXCL12P48061 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CXCL12P48061 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 AP005117.1-202ENST00000581724 1908 ntBASIC14.65□□□□□ -0.06
CXCL12P48061 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.65□□□□□ -0.06
CXCL12P48061 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CXCL12P48061 GUSBP10-201ENST00000417412 665 ntBASIC14.65□□□□□ -0.06
CXCL12P48061 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.65□□□□□ -0.06
CXCL12P48061 GCSHP3-201ENST00000431120 391 ntBASIC14.65□□□□□ -0.06
CXCL12P48061 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.65□□□□□ -0.06
CXCL12P48061 AGPAT5P1-201ENST00000455855 1019 ntBASIC14.65□□□□□ -0.06
CXCL12P48061 LINC00634-202ENST00000505157 222 ntBASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms