Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AL138725.1-201ENST00000407347 1314 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AC113367.3-201ENST00000508316 1912 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 TPM3P8-201ENST00000330554 643 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AC079776.1-201ENST00000401540 1152 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AC112492.5-201ENST00000421897 457 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 C2orf27AP3-201ENST00000434123 579 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 MESTP3-201ENST00000503460 968 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 KRT17P8-201ENST00000540749 863 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 HILS1-202ENST00000545329 423 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 ECM1P1-201ENST00000604092 1279 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AC244669.2-201ENST00000612320 853 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AL354718.3-201ENST00000616414 581 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AC138466.3-201ENST00000619983 221 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 CR382287.1-201ENST00000623954 586 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AC139749.1-202ENST00000617529 3139 ntBASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.17□□□□□ -0.14
ATG4BQ9Y4P1 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 INE2-201ENST00000630399 1874 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AC023908.3-201ENST00000564211 3047 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 RN7SKP230-201ENST00000365642 335 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 ARSEP1-201ENST00000420443 635 ntBASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.16□□□□□ -0.14
ATG4BQ9Y4P1 TLE1P1-201ENST00000422965 589 ntBASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms