Protein–RNA interactions for Protein: Q8N9L1

ZIC4, Zinc finger protein ZIC 4, humanhuman

Predictions only

Length 334 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4Q8N9L1 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ZIC4Q8N9L1 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 HOMER2P2-201ENST00000451621 847 ntBASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AP006547.1-201ENST00000563435 692 ntBASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 DUX4L45-201ENST00000566406 1057 ntBASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AC002472.3-201ENST00000640124 621 ntBASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AC099063.4-201ENST00000641099 1602 ntBASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 AC067930.6-201ENST00000623257 4947 ntBASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
ZIC4Q8N9L1 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 BNIP3P42-201ENST00000454982 569 ntBASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 BNIP3P29-201ENST00000598302 571 ntBASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 AC011447.5-201ENST00000616168 564 ntBASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
ZIC4Q8N9L1 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms