Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
NUP54Q7Z3B4 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 HILS1-202ENST00000545329 423 ntBASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 KRT90P-201ENST00000549264 1064 ntBASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 RHOXF1P1-202ENST00000635473 501 ntBASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 CICP24-201ENST00000605464 2705 ntBASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 AC023824.1-201ENST00000562945 2975 ntBASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.88□□□□□ -0.19
NUP54Q7Z3B4 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 CTBP2P5-201ENST00000454986 1264 ntBASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 FO681548.1-201ENST00000455617 1132 ntBASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 IGHV3-71-201ENST00000523324 359 ntBASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 AP005482.1-201ENST00000563722 1273 ntBASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.87□□□□□ -0.19
NUP54Q7Z3B4 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NUP54Q7Z3B4 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms