Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 LINC00554-201ENST00000564841 3011 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 Z97985.1-201ENST00000332270 946 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AL133466.1-201ENST00000447582 150 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 GOSR1-204ENST00000451249 1231 ntAPPRIS ALT1 TSL 2 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 CICP12-201ENST00000455801 843 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AC012618.1-201ENST00000461223 412 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 RN7SL720P-201ENST00000488178 304 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 GCOM2-201ENST00000509133 1104 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 SCARNA21-201ENST00000517026 139 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AC131206.1-201ENST00000538078 1211 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AC009712.1-201ENST00000564938 316 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AC005962.1-201ENST00000584100 773 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AC008805.1-201ENST00000590892 364 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 BX088702.1-201ENST00000610784 235 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AF254983.2-201ENST00000612331 135 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 Z98259.2-201ENST00000641583 609 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AC136759.1-202ENST00000530858 2194 ntBASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RNFT1Q5M7Z0 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 HLA-DPB2-205ENST00000435074 1188 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 FAM58BP-201ENST00000439056 645 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 NUP210P1-202ENST00000504322 710 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 ALG3P1-201ENST00000508806 1114 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 FGFR3P5-201ENST00000564496 886 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AC015967.2-201ENST00000624092 234 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AC006435.4-201ENST00000625037 234 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 AL356737.1-201ENST00000634391 234 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 FAM90A7P-201ENST00000382628 1395 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 FAM90A23P-201ENST00000400136 1395 ntBASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RNFT1Q5M7Z0 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms