Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
COL4A4P53420 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL4A4P53420 TMBIM7P-202ENST00000641474 1516 ntBASIC15.57■□□□□ 0.08
COL4A4P53420 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL4A4P53420 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL4A4P53420 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL4A4P53420 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
COL4A4P53420 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC15.57■□□□□ 0.08
COL4A4P53420 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
COL4A4P53420 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL4A4P53420 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC15.57■□□□□ 0.08
COL4A4P53420 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.57■□□□□ 0.08
COL4A4P53420 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.57■□□□□ 0.08
COL4A4P53420 AP000911.2-201ENST00000534330 502 ntBASIC15.57■□□□□ 0.08
COL4A4P53420 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC15.57■□□□□ 0.08
COL4A4P53420 MIR2392-201ENST00000584881 84 ntBASIC15.57■□□□□ 0.08
COL4A4P53420 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC15.57■□□□□ 0.08
COL4A4P53420 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC15.57■□□□□ 0.08
COL4A4P53420 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC15.57■□□□□ 0.08
COL4A4P53420 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL4A4P53420 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.57■□□□□ 0.08
COL4A4P53420 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
COL4A4P53420 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC15.56■□□□□ 0.08
COL4A4P53420 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
COL4A4P53420 MX1-218ENST00000619682 1980 ntTSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.56■□□□□ 0.08
COL4A4P53420 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC15.56■□□□□ 0.08
COL4A4P53420 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
COL4A4P53420 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 HLA-DMA-203ENST00000395305 777 ntBASIC15.56■□□□□ 0.08
COL4A4P53420 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 GUSBP10-201ENST00000417412 665 ntBASIC15.56■□□□□ 0.08
COL4A4P53420 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC15.56■□□□□ 0.08
COL4A4P53420 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 RPS5-204ENST00000598098 536 ntTSL 2 BASIC15.56■□□□□ 0.08
COL4A4P53420 NAMA-206ENST00000605377 509 ntTSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL4A4P53420 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL4A4P53420 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL4A4P53420 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
COL4A4P53420 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
COL4A4P53420 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A4P53420 AL390755.1-201ENST00000623716 2027 ntBASIC15.55■□□□□ 0.08
COL4A4P53420 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.55■□□□□ 0.08
COL4A4P53420 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
COL4A4P53420 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC15.55■□□□□ 0.08
COL4A4P53420 ERP29P1-201ENST00000442902 706 ntBASIC15.55■□□□□ 0.08
COL4A4P53420 AC023824.1-201ENST00000562945 2975 ntBASIC15.55■□□□□ 0.08
COL4A4P53420 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC15.55■□□□□ 0.08
COL4A4P53420 BX088702.1-201ENST00000610784 235 ntBASIC15.55■□□□□ 0.08
COL4A4P53420 AC027601.3-201ENST00000622907 509 ntBASIC15.55■□□□□ 0.08
COL4A4P53420 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC15.55■□□□□ 0.08
COL4A4P53420 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 AC007292.2-201ENST00000593524 1812 ntBASIC15.55■□□□□ 0.08
COL4A4P53420 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.55■□□□□ 0.08
COL4A4P53420 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
COL4A4P53420 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
COL4A4P53420 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
COL4A4P53420 CICP23-201ENST00000605013 2741 ntBASIC15.55■□□□□ 0.08
COL4A4P53420 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
COL4A4P53420 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 AC073869.2-201ENST00000417338 1026 ntBASIC15.54■□□□□ 0.08
COL4A4P53420 AC108734.2-201ENST00000420887 1069 ntBASIC15.54■□□□□ 0.08
COL4A4P53420 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A4P53420 GCSHP3-201ENST00000431120 391 ntBASIC15.54■□□□□ 0.08
COL4A4P53420 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.54■□□□□ 0.08
COL4A4P53420 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms