Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.52■□□□□ 0.08
PTPN9P43378 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.52■□□□□ 0.08
PTPN9P43378 RN7SL713P-201ENST00000582127 302 ntBASIC15.52■□□□□ 0.08
PTPN9P43378 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.52■□□□□ 0.08
PTPN9P43378 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.52■□□□□ 0.08
PTPN9P43378 AL035252.4-201ENST00000624174 288 ntBASIC15.52■□□□□ 0.08
PTPN9P43378 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PTPN9P43378 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN9P43378 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN9P43378 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
PTPN9P43378 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN9P43378 AL354989.2-201ENST00000435838 1540 ntBASIC15.52■□□□□ 0.07
PTPN9P43378 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
PTPN9P43378 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.52■□□□□ 0.07
PTPN9P43378 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN9P43378 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PTPN9P43378 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PTPN9P43378 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.51■□□□□ 0.07
PTPN9P43378 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.51■□□□□ 0.07
PTPN9P43378 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PTPN9P43378 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 AC007326.2-201ENST00000624224 7579 ntBASIC15.51■□□□□ 0.07
PTPN9P43378 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.51■□□□□ 0.07
PTPN9P43378 INTS4P1-203ENST00000641008 3683 ntBASIC15.51■□□□□ 0.07
PTPN9P43378 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.51■□□□□ 0.07
PTPN9P43378 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.51■□□□□ 0.07
PTPN9P43378 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.51■□□□□ 0.07
PTPN9P43378 AC112492.5-201ENST00000421897 457 ntBASIC15.51■□□□□ 0.07
PTPN9P43378 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PTPN9P43378 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.51■□□□□ 0.07
PTPN9P43378 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.51■□□□□ 0.07
PTPN9P43378 AC073413.1-201ENST00000603927 732 ntBASIC15.51■□□□□ 0.07
PTPN9P43378 AL512343.1-201ENST00000605837 169 ntBASIC15.51■□□□□ 0.07
PTPN9P43378 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
PTPN9P43378 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PTPN9P43378 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
PTPN9P43378 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.51■□□□□ 0.07
PTPN9P43378 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PTPN9P43378 BX640514.1-201ENST00000583223 1918 ntBASIC15.51■□□□□ 0.07
PTPN9P43378 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PTPN9P43378 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 AC023908.3-201ENST00000564211 3047 ntBASIC15.5■□□□□ 0.07
PTPN9P43378 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 AHCYP2-201ENST00000430630 1300 ntBASIC15.5■□□□□ 0.07
PTPN9P43378 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
PTPN9P43378 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.5■□□□□ 0.07
PTPN9P43378 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.5■□□□□ 0.07
PTPN9P43378 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 AC234783.1-201ENST00000441761 496 ntBASIC15.5■□□□□ 0.07
PTPN9P43378 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.5■□□□□ 0.07
PTPN9P43378 COX5BP1-201ENST00000507622 393 ntBASIC15.5■□□□□ 0.07
PTPN9P43378 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.5■□□□□ 0.07
PTPN9P43378 RAB43P1-201ENST00000561790 589 ntBASIC15.5■□□□□ 0.07
PTPN9P43378 C2orf69P2-201ENST00000562032 1123 ntBASIC15.5■□□□□ 0.07
PTPN9P43378 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.5■□□□□ 0.07
PTPN9P43378 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PTPN9P43378 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PTPN9P43378 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms