Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
COL5A1P20908 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC13.99□□□□□ -0.17
COL5A1P20908 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
COL5A1P20908 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 AC008741.2-201ENST00000612792 3115 ntBASIC13.99□□□□□ -0.17
COL5A1P20908 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL5A1P20908 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC13.99□□□□□ -0.17
COL5A1P20908 RN7SL530P-201ENST00000485097 298 ntBASIC13.99□□□□□ -0.17
COL5A1P20908 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 AP003398.1-201ENST00000531124 318 ntBASIC13.99□□□□□ -0.17
COL5A1P20908 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC13.99□□□□□ -0.17
COL5A1P20908 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 NAMA-206ENST00000605377 509 ntTSL 5 BASIC13.99□□□□□ -0.17
COL5A1P20908 AC090386.2-201ENST00000623010 1039 ntBASIC13.99□□□□□ -0.17
COL5A1P20908 AC073592.2-201ENST00000623062 780 ntBASIC13.99□□□□□ -0.17
COL5A1P20908 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.99□□□□□ -0.17
COL5A1P20908 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL5A1P20908 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.99□□□□□ -0.17
COL5A1P20908 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL5A1P20908 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL5A1P20908 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
COL5A1P20908 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 AP002353.1-201ENST00000528257 1599 ntBASIC13.98□□□□□ -0.17
COL5A1P20908 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL5A1P20908 Z69890.1-201ENST00000382990 339 ntBASIC13.98□□□□□ -0.17
COL5A1P20908 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 RN7SKP109-201ENST00000410592 316 ntBASIC13.98□□□□□ -0.17
COL5A1P20908 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.98□□□□□ -0.17
COL5A1P20908 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC13.98□□□□□ -0.17
COL5A1P20908 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC13.98□□□□□ -0.17
COL5A1P20908 SCARNA12-201ENST00000459155 270 ntBASIC13.98□□□□□ -0.17
COL5A1P20908 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC13.98□□□□□ -0.17
COL5A1P20908 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 AC140113.1-201ENST00000603467 169 ntBASIC13.98□□□□□ -0.17
COL5A1P20908 AC002044.2-201ENST00000624910 970 ntBASIC13.98□□□□□ -0.17
COL5A1P20908 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL5A1P20908 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL5A1P20908 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.98□□□□□ -0.17
COL5A1P20908 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.97□□□□□ -0.17
COL5A1P20908 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
COL5A1P20908 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.97□□□□□ -0.17
COL5A1P20908 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
COL5A1P20908 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL5A1P20908 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms